#ZHAO LINA# wrote:
Make sure your gromacs is the latest version.
If not, update and try again.
The tutorial is specifically written for version 4.0.5, but will be compatible
with any version <4.5. Since the re-organization of the force field
directories, the information provided in the tutorial is not correct.
I would recommend not upgrading until the OP has sorted out the problem and can
then (maybe) work out the appropriate translation to the version 4.5.x scheme.
-Justin
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*From:* gmx-users-boun...@gromacs.org [gmx-users-boun...@gromacs.org] on
behalf of praba vathy [sumipraba2...@gmail.com]
*Sent:* Thursday, September 02, 2010 9:06 PM
*To:* gmx-users@gromacs.org
*Subject:* [gmx-users] Need help!!!
Hi,
I am using simulation for a membrane protein.
So i have downloaded the dppc.pdb along with it's topology files.
I have used the following steps for the simulation (Based on the link:
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin/gmx-tutorials/membrane_protein/01_pdb2gmx.html).
We have used the commands and steps as described in the above link.
But we have got a fatal error (Atom type C not found) while running this
command,
grompp -f mini.mdp -c dppc128.gro -p topol_dppc.top -o em.tp <http://em.tp>
I cant sort out this problem.
Please anybody help me to sort out this problem.
Awaiting for your valuable replies.
Praba
--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
========================================
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