Hi, I want to change the non-bonded parameters to modify the interaction between water molecules and protein molecules.
I am using CHARMM forcefield with Tip3p water. The ffnonbonded.itp file of the forcefield has non-bonded parameters for tip3p water. Can I achieve the above by changing these parameters? If yes, will this also change the non-bonded parameters for water - water interaction? Pooja -- Quaerendo Invenietis-Seek and you shall discover.
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