#ZHAO LINA# wrote:
Hi,
Program do_dssp, VERSION 4.0.7
Source code file: pathToGromacs/gromacs-4.0.7/src/tools/do_dssp.c, line: 471
Fatal error:
Failed to execute command: pathToDSSP/ -na ddEPI6I2 ddFHouPz > /dev/null
2> /dev/null
It came out two or three file like ddEPI6I2 and then died like above.
My first time try dssp, so do not know how to examine it.
Your DSSP environment variable is set incorrectly. do_dssp is trying to call
"pathToDSSP" as the executable.
http://www.gromacs.org/Documentation/Gromacs_Utilities/do_dssp
Note that you should substitute a meaningful PATH on your system, not something
like "pathToDSSP."
-Justin
Thanks for any advice,
lina
--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
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