Hi, Thanks for your response, I modified that path parts when I posted that information.
So my environment set was correct. I just suddenly realize I may not have root privilege there, cause the dssp was not small, not in mine personal computer, there are in some other places. lina ________________________________________ From: gmx-users-boun...@gromacs.org [gmx-users-boun...@gromacs.org] on behalf of Justin A. Lemkul [jalem...@vt.edu] Sent: Friday, November 05, 2010 9:07 PM To: Discussion list for GROMACS users Subject: Re: [gmx-users] dssp #ZHAO LINA# wrote: > Hi, > > Program do_dssp, VERSION 4.0.7 > Source code file: pathToGromacs/gromacs-4.0.7/src/tools/do_dssp.c, line: 471 > > Fatal error: > Failed to execute command: pathToDSSP/ -na ddEPI6I2 ddFHouPz > /dev/null > 2> /dev/null > > It came out two or three file like ddEPI6I2 and then died like above. > > My first time try dssp, so do not know how to examine it. > Your DSSP environment variable is set incorrectly. do_dssp is trying to call "pathToDSSP" as the executable. http://www.gromacs.org/Documentation/Gromacs_Utilities/do_dssp Note that you should substitute a meaningful PATH on your system, not something like "pathToDSSP." -Justin > Thanks for any advice, > > lina > -- ======================================== Justin A. Lemkul Ph.D. Candidate ICTAS Doctoral Scholar MILES-IGERT Trainee Department of Biochemistry Virginia Tech Blacksburg, VA jalemkul[at]vt.edu | (540) 231-9080 http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin ======================================== -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
