http://biskit.pasteur.fr/install/applications/dssp
http://oldwww.gromacs.org/pipermail/gmx-users/2009-April/041004.html http://www.gromacs.org/Documentation/Gromacs_Utilities/do_dssp?highlight=dssp HTH, lina ________________________________ From: gmx-users-boun...@gromacs.org [gmx-users-boun...@gromacs.org] on behalf of ahmet yıldırım [ahmedo...@gmail.com] Sent: Wednesday, November 10, 2010 10:02 PM To: Discussion list for GROMACS users Subject: [gmx-users] DSSP error Hi, I installed in /usr/local/bin the DSSP program. And I set the environment variable with a command such as “export DSSP=/usr/local/bin/dssp”. a...@ubuntu:/Desktop/work# do_dssp -s run.tpr -f run.xtc ... Selected 1: 'Protein' There are 164 residues in your selected group Opening library file /usr/share/gromacs/top/ss.map Reading frame 0 time 0.000 Back Off! I just backed up dduigjCp to ./#dduigjCp.1# ------------------------------------------------------- Program do_dssp, VERSION 4.0.5 Source code file: ../../../../src/tools/do_dssp.c, line: 471 Fatal error: Failed to execute command: /usr/local/bin/dssp -na dduigjCp ddDsSuzR > /dev/null 2> /dev/null ------------------------------------------------------- "Jesus Not Only Saves, He Also Frequently Makes Backups." (Myron Bradshaw) What should I do? Thanks in advance -- Ahmet YILDIRIM
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