ahmet yıldırım wrote:
1.step-r...@ab-desktop:/home/ab/Desktop# tar xvzf dsspcmbi.tar.gz
2.step-r...@ab-desktop:/home/ab/Desktop/dssp#./DsspCompileGCC
3.step-r...@ab-desktop:/home/ab/Desktop/dssp# cp dsspcmbi dssp
4.step-r...@ab-desktop:/home/ab/Desktop/dssp# export
DSSP=/usr/local/bin/dssp
Dear Justin,
I compiled the program. you said "Your environment variable is wrong",
Now is it true??
Yes, although it's still not necessary. As I said before, if your dssp binary
is in /usr/local/bin/dssp, then that's what Gromacs expects. You only have to
set the DSSP environment variable if you've got the dssp binary somewhere else.
-Justin
Thanks for your helps
2010/11/10 Ali Naqvi <mna...@ryerson.ca <mailto:mna...@ryerson.ca>>
May be the directory you are working in is read only, as Justin
mentioned this could be a permissions issue.
As an example the super computer that I use, cannot write anything
in the home directory, therefore all simulations and analysis are
done in scratch.
Ali
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--
Ahmet YILDIRIM
--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
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