Hi justin
in the tutorail you have It is not necessary to run a complete energy minimization procedure on the bilayer, although you can if you want. The .tpr file contains information about bonding and periodicity, so it can, in a sense, be used to reconstruct "broken" molecules. when i tried using the minimized gro file i go this error Fatal error: Structure or trajectory file has more atoms (3655) than the topology (1792) For more information and tips for troubleshooting, please check the GROMACS >> >
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