aiswarya.pa...@gmail.com wrote:
Hi Users,

I performed a simple minimization for a protein complex in vacuum. Didn't get 
any error while performing the minimization but when visualised the pdb file 
after the minimization the chains of the protein complex separated.

What could be the reason.


Please see FAQ #3 under the heading:

http://www.gromacs.org/Documentation/FAQs#Analysis_and_Visualization

-Justin

Thanks,
Aiswarya Sent from my BlackBerry® on Reliance Mobile, India's No. 1 Network. Go for it!


--
========================================

Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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