On 20/10/2011 4:14 PM, aiswarya pawar wrote:
Hi,
All the parameters are ok, still i get the complex separated.
Simulation parameters have nothing to do with the phenomena in the FAQ
Justin pointed out to you. Please read it.
Mark
On Wed, Oct 19, 2011 at 7:02 PM, Justin A. Lemkul <jalem...@vt.edu
<mailto:jalem...@vt.edu>> wrote:
aiswarya.pa...@gmail.com <mailto:aiswarya.pa...@gmail.com> wrote:
Hi Users,
I performed a simple minimization for a protein complex in
vacuum. Didn't get any error while performing the minimization
but when visualised the pdb file after the minimization the
chains of the protein complex separated.
What could be the reason.
Please see FAQ #3 under the heading:
http://www.gromacs.org/Documentation/FAQs#Analysis_and_Visualization
-Justin
Thanks,
Aiswarya Sent from my BlackBerry® on Reliance Mobile, India's
No. 1 Network. Go for it!
--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu <http://vt.edu> | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
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