Hello, System Admin said that the Job fails on 32 and 128 because memory is insufficient for each task, so upon increasing the nodes, data gets distributed across more number of nodes and each node gets less memory occupancy and he also mentioned that he was able to run on 512 nodes but it was giving error for not having sufficient data for 512 nodes.
I have run the same job on 8 nodes in i7 machine. Thank you With Regards Kavya On Mon, Oct 31, 2011 at 5:47 PM, Justin A. Lemkul <jalem...@vt.edu> wrote: > > > Kavyashree M wrote: > >> Dear Users, >> >> I was trying to run a simulation (gromacs4.5.3) >> on a Bluegene/L machine. But I was unable to run. >> System admin say that I need to change the input >> file. I am not sure what needs to be changed in the >> input file which specifies no. of nodes usage. >> >> > Sounds like your system admin should be offering you some more help, since > they know the specifics of the hardware, queuing software, etc. > > > I am not familiar with the bluegene machines. Kindly >> suggest the possible solutions. >> >> > Without seeing your input file(s), there's nothing anyone can do. Be > mindful that this list pertains to Gromacs-specific problems, which do not > seem to be present here. > > -Justin > > -- > ==============================**========== > > Justin A. Lemkul > Ph.D. Candidate > ICTAS Doctoral Scholar > MILES-IGERT Trainee > Department of Biochemistry > Virginia Tech > Blacksburg, VA > jalemkul[at]vt.edu | (540) 231-9080 > http://www.bevanlab.biochem.**vt.edu/Pages/Personal/justin<http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin> > > ==============================**========== > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/**mailman/listinfo/gmx-users<http://lists.gromacs.org/mailman/listinfo/gmx-users> > Please search the archive at http://www.gromacs.org/** > Support/Mailing_Lists/Search<http://www.gromacs.org/Support/Mailing_Lists/Search>before > posting! > Please don't post (un)subscribe requests to the list. Use the www > interface or send it to gmx-users-requ...@gromacs.org. > Can't post? Read > http://www.gromacs.org/**Support/Mailing_Lists<http://www.gromacs.org/Support/Mailing_Lists> >
-- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
