Justin, Could you tell me what difference in inflategro parameters ( cut-off for lipid removing and scaling factors) should I make for insertion protein in another bilayes in comparison tu tutorial ?
Now I'm working with DMPC. I've inserted symmetrical alpha helices protein in this bilayer but inflategro deleate 2 lipid from upper and just 1 from lower layer. It's strange because I suppose that equal bilayer molecules would be removed :o On Inflategro's sites I havenot found such specifity for above parameters for different bilayers :( James
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