You need to post how did you exactly installed fftw and gromacs in order
to get more help. It seems to me that the problem is related to the
shared fftw libraries. Could you compile the gromacs binaries with
--disable-shared?
Javier
El 11/01/12 12:07, Anik Sen escribió:
I have already done that but the problem persisits.
------------------------------------------------------------------------
*From:* gmx-users-boun...@gromacs.org [gmx-users-boun...@gromacs.org]
on behalf of Javier Cerezo [j...@um.es]
*Sent:* Wednesday, January 11, 2012 1:56 PM
*To:* gmx-users@gromacs.org
*Subject:* Re: [gmx-users] (no subject)
Hi
You should compile your fftw with --enable-shared if you want to link
your gromacs installation to shared libraries (which is the default in
the latest versions). Check the installation instructions in the website.
Javier
El 11/01/12 08:20, Anik Sen escribió:
Im having problems installing Gromacs. I followed the GROMACS
installation instructions as suggested by justin. But in vain. The
same error is coming again and again. Please suggest.
The error file is given below:
*/usr/bin/ld: /usr/local/lib/libfftw3.a(plan-dft-r2c-3d.o):
relocation R_X86_64_32 against `a local symbol' can not be used when
making a shared object; recompile with -fPIC*
*/usr/local/lib/libfftw3.a: could not read symbols: Bad value*
*collect2: ld returned 1 exit status*
*make[3]: *** [libmd_d.la <http://libmd_d.la/>] Error 1*
*make[3]: Leaving directory
`/home/ganguly/Gromacs/gromacs-4.5.5/src/mdlib'*
*make[2]: *** [all-recursive] Error 1*
*make[2]: Leaving directory `/home/ganguly/Gromacs/gromacs-4.5.5/src'*
*make[1]: *** [all] Error 2*
*make[1]: Leaving directory `/home/ganguly/Gromacs/gromacs-4.5.5/src'*
*make: *** [all-recursive] Error 1*
Thanx in advance
Anik
========================================================
Anik Sen
Student
CSIR-Central Salt & Marine Chemicals Research Institute,
Gijubhai Badheka Marg.
Bhavnagar, Gujarat 364002
www.csmcri.org
========================================================
--
Javier CEREZO BASTIDA
PhD Student
Physical Chemistry
Universidad de Murcia
Murcia (Spain)
Phone: (+34)868887434
--
Javier CEREZO BASTIDA
PhD Student
Physical Chemistry
Universidad de Murcia
Murcia (Spain)
Phone: (+34)868887434
--
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