Hi A protein sits on the top of another protein (not docking). I then used pdb2gmx command to generate the topology. Surprisingly, i got five files, as given below: I think the two proteins are not connected each other. is it possible to make it one posre and topol file.
Many thanks in advance posre_Protein_chain_A.itp posre_Protein_chain_A2.itp topol.top topol_Protein_chain_A.itp topol_Protein_chain_A2.itp
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