On Thu, Mar 22, 2012 at 11:54 AM, Spring buds <winterho...@gmail.com> wrote: > Hi > > A protein sits on the top of another protein (not docking). I then used > pdb2gmx command to generate the topology. Surprisingly, i got five files, > as given below: I think the two proteins are not connected each other. is it > possible to make it one posre and topol file.
You have already have one posre and topol.top more topol.top check what's inside your topol.top. pay attention to "include" > > Many thanks in advance > > posre_Protein_chain_A.itp > posre_Protein_chain_A2.itp > topol.top > topol_Protein_chain_A.itp > topol_Protein_chain_A2.itp > > > > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
