On 7/04/2012 12:37 AM, Justin A. Lemkul wrote:
bipin singh wrote:
Thanks for your comments.
One more question.
Does Gromacs saves velocities in pdb files, when we use gen_vel=yes
option in mdp and save the output(-c) of mdrun as pdb file instead of
gro file.
No. Velocities are only saved in the .trr and/or .cpt files. There
is no place for velocities in .pdb files.
It's conceivable that there are velocities in a mdrun -c
finalstructure.gro file, but these would have to be only at low
precision, and thus often useless.
Mark
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