Thank you very much from your time. Best Regards Sara
----- Original Message ----- From: Mark Abraham <mark.abra...@anu.edu.au> To: Discussion list for GROMACS users <gmx-users@gromacs.org> Cc: Sent: Friday, October 5, 2012 9:48 AM Subject: Re: [gmx-users] equilibrium for box of simulation On 5/10/2012 4:12 PM, mohammad agha wrote: > Dear Mark, > > > Yes, you're right. Excuse me, for this and thank you for your reminder. > May I know your idea about cause of my doubt, Please? As I said yesterday: > At least one of your volume, contents or model physics are not > consistent with the others, but only you can say which. Since only you know anything about your volume, contents and model physics, or that of the work you think you should be replicating, we can't help at the moment. See previous comment about relevant information :-) Mark > > Best Regards > Sara > > > > ----- Original Message ----- > From: Mark Abraham <mark.abra...@anu.edu.au> > To: Discussion list for GROMACS users <gmx-users@gromacs.org> > Cc: > Sent: Friday, October 5, 2012 9:34 AM > Subject: Re: [gmx-users] equilibrium for box of simulation > > On 5/10/2012 3:55 PM, mohammad agha wrote: >> Dear Justin, >> >> Thank you very much. >> So, decreasing of box dimensions is not bad, if all thing process natural, >> yes? >> The cause of my doubt was because of in the most of articles was said for >> example " we select box with dimensions 10nm that after equilibrium was >> converted to 11nm" and I didn't see the report of decreasing of box >> dimensions! May I know your idea about it, Please? > Following a published method closely and observing an opposite result is a > cause for concern. You have to judge "closely," however. You should have said > earlier this was one of your reasons for doubt, rather than leave us to > guess. The quality of the help you might receive is often in direct > proportion to the quantity of relevant information you give in asking for it. > > Mark > -- gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > * Please don't post (un)subscribe requests to the list. Use the www interface > or send it to gmx-users-requ...@gromacs.org. > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
