Dear Mark, 

Yes, you're right. Excuse me, for this and thank you for your reminder.
May I know your idea about cause of my doubt, Please?

Best Regards
Sara



----- Original Message -----
From: Mark Abraham <mark.abra...@anu.edu.au>
To: Discussion list for GROMACS users <gmx-users@gromacs.org>
Cc: 
Sent: Friday, October 5, 2012 9:34 AM
Subject: Re: [gmx-users] equilibrium for box of simulation

On 5/10/2012 3:55 PM, mohammad agha wrote:
> Dear Justin,
> 
> Thank you very much.
> So, decreasing of box dimensions is not bad, if all thing process natural, 
> yes?
> The cause of my doubt was because of in the most of articles was said for 
> example " we select box with dimensions 10nm that after equilibrium was 
> converted to 11nm" and I didn't see the report of decreasing of box 
> dimensions! May I know your idea about it, Please?

Following a published method closely and observing an opposite result is a 
cause for concern. You have to judge "closely," however. You should have said 
earlier this was one of your reasons for doubt, rather than leave us to guess. 
The quality of the help you might receive is often in direct proportion to the 
quantity of relevant information you give in asking for it.

Mark
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