It is 4.5.5. I need to say that I had a pdb file which was produced by VMD, May it be the reason of problem?
Sincerely, Shima ________________________________ From: Justin Lemkul <jalem...@vt.edu> To: Discussion list for GROMACS users <gmx-users@gromacs.org> Sent: Monday, December 31, 2012 7:54 PM Subject: Re: [gmx-users] Index file On 12/31/12 11:20 AM, Shima Arasteh wrote: > No, I see CL ions in gro file after using editconf, but when I want to make > an index file, there is not CL option to choose! > What Gromacs version is this? I cannot reproduce this problem with 4.5.5 or the development 4.6 version. Anything I have with CL in it shows up in the make_ndx list. -Justin -- ======================================== Justin A. Lemkul, Ph.D. Research Scientist Department of Biochemistry Virginia Tech Blacksburg, VA jalemkul[at]vt.edu | (540) 231-9080 http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin ======================================== -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists