On 12/31/12 11:45 AM, Shima Arasteh wrote:
It is 4.5.5.
I need to say that I had a pdb file which was produced by VMD, May it be the
reason of problem?
Without seeing the aforementioned information (substituting make_ndx screen
output for editconf command, which is not relevant), it's impossible to say
anything. There is no logical reason why ions present in the coordinate file
(independent of format) do not show up in the selection list and I cannot
reproduce the problem with any file I have available. Ions are showing up just
fine in everything I can see.
-Justin
--
========================================
Justin A. Lemkul, Ph.D.
Research Scientist
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
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