On 1/15/13 7:13 AM, James Starlight wrote:
Justin,
I want to obtain timescale on X as well as number of residues on Y
on the xmp graph . By default that graph has not legend so it's hard
to analyse it .
The legends are printed in the .xvg header. I've never had a problem plotting
its contents (though they are usually somewhat unclear when plotted together)
with xmgrace -nxy scount.xvg
By the way have you forced with some problems with dppc ? Simetimes
I've obtain error like
There are 286 residues in your selected group
dssp cmd='/usr/local/bin/dssp -i dd42GVbd -o ddpu8ln2 > /dev/null 2> /dev/null'
Reading frame 0 time 0.000
Back Off! I just backed up dd42GVbd to ./#dd42GVbd.1
Fatal error:
Failed to execute command: Try specifying your dssp version with the
-ver option.
and I dont know how to fix it.
I'm using gromacs-4.6-beta 3 with dssp 2.0.3
Since dssp changed its command line options, Gromacs had to adapt as well. The
error tells you to use the -ver option; you should do so. Version 2 should be
the default, so check to make sure you're actually using that version and not
the old dssp.
-Justin
--
========================================
Justin A. Lemkul, Ph.D.
Research Scientist
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
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