Justin, thanks both options works perfect.
James 2013/1/15 Justin Lemkul <jalem...@vt.edu>: > > > On 1/15/13 7:13 AM, James Starlight wrote: >> >> Justin, >> >> >> I want to obtain timescale on X as well as number of residues on Y >> on the xmp graph . By default that graph has not legend so it's hard >> to analyse it . >> > > The legends are printed in the .xvg header. I've never had a problem > plotting its contents (though they are usually somewhat unclear when plotted > together) with xmgrace -nxy scount.xvg > > >> By the way have you forced with some problems with dppc ? Simetimes >> I've obtain error like >> >> >> There are 286 residues in your selected group >> dssp cmd='/usr/local/bin/dssp -i dd42GVbd -o ddpu8ln2 > /dev/null 2> >> /dev/null' >> Reading frame 0 time 0.000 >> Back Off! I just backed up dd42GVbd to ./#dd42GVbd.1 >> >> >> Fatal error: >> Failed to execute command: Try specifying your dssp version with the >> -ver option. >> >> and I dont know how to fix it. >> >> I'm using gromacs-4.6-beta 3 with dssp 2.0.3 >> > > Since dssp changed its command line options, Gromacs had to adapt as well. > The error tells you to use the -ver option; you should do so. Version 2 > should be the default, so check to make sure you're actually using that > version and not the old dssp. > > > -Justin > > -- > ======================================== > > Justin A. Lemkul, Ph.D. > Research Scientist > Department of Biochemistry > Virginia Tech > Blacksburg, VA > jalemkul[at]vt.edu | (540) 231-9080 > http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin > > ======================================== > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > * Please don't post (un)subscribe requests to the list. Use the www > interface or send it to gmx-users-requ...@gromacs.org. > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
