If the goal is to simply count the secondary structure, pass the dssp output file through grep "__" dssp_output.xpm | wc
Fill in the dssp code for each secondary structure in the underline separately. Grep would extract all characters that fit that pattern and wc would count it. Hope that helps. Ali -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
