I suppose there would also be a way of passing do_dssp output on to make_ndx then you could use the index with g_hbond to count hbonds in each secondary structure element.
Best wishes James > If the goal is to simply count the secondary structure, pass the dssp > output file through grep "__" dssp_output.xpm | wc > > Fill in the dssp code for each secondary structure in the underline > separately. Grep would extract all characters that fit that pattern and wc > would count it. > > Hope that helps. > Ali > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > * Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
