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By: raysatiro

I have also noticed stderr mixing with stdout on some programs I have that use
crt. Even if you are not buffering stdout, and stderr isn't buffered (default),
and regardless of flushing, the text can mix under certain circumstances (like
piping). I have not found a solution despite a lot of experiments. You can do
something like this though pipecmd1 | pipecmd2 2>err | pipecmd3 .
cmd2 is the mixed out/err output

      t  i ff/ 0.2 /ti f f - 0 . 2 - b i n . z i p
    so rt :       c   l o s e   f a i l e d :   - 


To your question, I've encountered the hash issue before and if I remember 
correctly
what happens is the (zeroed) sectors at the end are not added/compressed in
the hash value.  Discussed briefly here:
http://article.gmane.org/gmane.os.cygwin/103991



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