Have  you used the retry recipe?  It has made about 99.9% of my timeouts go 
away.

On Jan 26, 2010, at 5:30 PM, phtq wrote:

> Our application error log for the 26th showed around 160 failed http
> requests due to timeouts. That's 160 users being forced to hit the
> refresh button on their browser to get a normal response. A more
> typical day has 20 to 60 timeouts. We have been waiting over a year
> for this bug to get fixed with no progress at all. Its beginning to
> look like it's unfixable so perhaps Google could provide some
> workaround. In our case, the issue arises because of the 1,000 file
> limit. We are forced to hold all our .js, .css, .png. mp3, etc. files
> in the database and serve them from there. The application is quite
> large and there are well over 10,000 files. The Python code serving up
> the files does just one DB fetch and has about 9 lines of code so
> there is no way it can be magically restructured to make the Timeout
> go away. However, putting all the files on the app engine as real
> files would avoid the DB access and make the problem go away. Could
> Google work towards removing that file limit?
> 
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