A colleague of mine seems to have found a solution to this:
http://code.google.com/p/google-web-toolkit/issues/detail?id=4463#c7



On Jan 18, 5:54 pm, Erik Uzureau <uzur...@gmail.com> wrote:
> The real question here is what do we all (on this thread) have in
> common that the rest of the world doesn't.
>
> Surely we are more than 6 people in the world using GWT 2.0.... are we
> the only people withgwt-servlet.jar
> in /WEB-INF/lib in our SVN repositories.... or is it something else?
>
> Also, if it is patently wrong to have thegwt-servlet.jarfile in the /
> WEB-INF/lib file... then why are we clearly
> told to put it there here:
>
> http://code.google.com/webtoolkit/doc/latest/DevGuideOrganizingProjec...
>
> ??
>
> Frustrated,
> Erik
>
> On Jan 9, 5:01 am, Jeff Schnitzer <j...@infohazard.org> wrote:
>
>
>
> > Ignore this solution.  The problem is simply intermittent and didn't
> > happen a few times.  It nevertheless persists.
>
> > Jeff
>
> > On Fri, Jan 1, 2010 at 1:58 PM, Jeff Schnitzer <j...@infohazard.org> wrote:
> > > Amazingly, you're right.  The solution is to ignore the message,
> > > *don't* revert your files back, and restart Eclipse again.  The plugin
> > > deletes the files the first time, then recreates them the second...
> > > and since the new files are identical to the old, svn is happy.
>
> > > Jeff
>
> > > On Fri, Jan 1, 2010 at 12:18 AM, John OConner <jsocon...@gmail.com> wrote:
> > >> I found the culprit. The eclipse plugin preferences file explicity
> > >> namesgwt-servlet.jaras a file that it must copy to the web-inf/lib
> > >> directory. So I assume that SVN (and for me it is Perforce) see that
> > >> action as an attempted delete as well. I resolved this myself by
> > >> removing that file from web-inf/lib and just letting the plugin have
> > >> its way. I tried deleting the offending line from the preferences
> > >> file, but the plugin insisted on replacing that line on startup. Odd,
> > >> if an application *insists* on a very specific setting regardless of
> > >> user intentions or my own preferences, why put the setting in an
> > >> external preferences file to begin with?
>
> > >> Regards,
> > >> John O'Conner
>
> > >> On Dec 31 2009, 7:05 pm, Jeff Schnitzer <j...@infohazard.org> wrote:
> > >>> I have this exact same problem... it's quite annoying.
>
> > >>> It also sometimes happens with GAE jars.  Every time I restart Eclipse
> > >>> I have to go through my projects and revert any deleted jars.
>
> > >>> Jeff
>
> > >>> On Wed, Dec 30, 2009 at 5:53 PM, itwip.81 <itwip...@gmail.com> wrote:
> > >>> > Dear Sir/Madam,
>
> > >>> > I have encountered a problem after upgrading from GWT 1.7 to 2.0. I
> > >>> > did uninstall all of the previous GWT SDKs, AppEngine and plugin
> > >>> > before I install the new 2.0 plugin. I am using Subversion/subclipse
> > >>> > for version control in our eclipse project. However, the "gwt->>> > 
> > >>> > servlet.jar" has been marked as being deleted (according to subversion
> > >>> > - red cross) every time I start up eclipse since I upgrade to gwt 2.0.
> > >>> > So, now i will need to revert the deletion every time I reopen the
> > >>> > project before commiting anything. Have anyone experience this before?
> > >>> > Does anyone know the soultion to solve this annoying problem.
>
> > >>> > PS: It seems like GWT 2.0 plugin is trying to replace the 2.0gwt->>> 
> > >>> > > servlet.jarwith any existinggwt-servlet.jarin our project folder
> > >>> > after the upgrade. But it is wrong to repeat this process everytime i
> > >>> > reopen the project.
>
> > >>> > Best regards,
>
> > >>> > Martin
>
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