MCW is in. I’d prefer a docker instance. In the mean time I’ve developed a separate tool to extract all the data for a query into a sqlite file.
https://github.com/MCW-BMI/i2b2Exporter It does not just take the concepts requested in the query as databuilder does , but all associated concepts for the query. G George Kowalski Biomedical Informatics Software Engineer Clinical & Translational Science Institute Medical College of Wisconsin 9200 West Wisconsin Avenue, Suite L722A Milwaukee, Wisconsin USA 53226 414.805.7318 (office) / gkowal...@mcw.edu<mailto:gkowal...@mcw.edu> From: <gpc-dev-boun...@listserv.kumc.edu> on behalf of Dan Connolly <dconno...@kumc.edu> Date: Thursday, July 7, 2016 at 2:54 PM To: Phillip Reeder <phillip.ree...@utsouthwestern.edu>, "French, Tony" <adfre...@regenstrief.org>, "GPC-DEV@LISTSERV.KUMC.EDU" <gpc-dev@listserv.kumc.edu> Subject: RE: DataBuilder installation instructions Yes, I'd like that. Interested sites, please do chime in. I'll try to figure out details. I tend to use the normal Tuesday call slot for such things; perhaps it could start at 11:30 or something. We'll see. -- Dan ________________________________ From: Phillip Reeder [phillip.ree...@utsouthwestern.edu] Sent: Thursday, July 07, 2016 12:53 PM To: Dan Connolly; French, Tony; GPC-DEV@LISTSERV.KUMC.EDU Subject: Re: DataBuilder installation instructions Dan, Any chance someone from your site could go through the install of the current version so that other sites could be on the most recent version? I know we, at UTSW, would like to get to a more recent version as well. I know you have made numerous changes and enhancements in the past year that we would like to have. Maybe we could schedule an installathon and get a bunch of people up to the latest version? Would other sites be interested? Phillip From: <gpc-dev-boun...@listserv.kumc.edu<redir.aspx?REF=-TuGCYglDB3qOBv4gp8MAZB2QepWxTb78D9rgtdx2YEETABEoKbTCAFtYWlsdG86Z3BjLWRldi1ib3VuY2VzQGxpc3RzZXJ2Lmt1bWMuZWR1>> on behalf of Dan Connolly <dconno...@kumc.edu<redir.aspx?REF=Q1HPM7XGpVog9uReo0Fi62hTciKe6gZrDzYtwzGs1qQETABEoKbTCAFtYWlsdG86ZGNvbm5vbGx5QGt1bWMuZWR1>> Date: Thursday, July 7, 2016 at 11:10 AM To: "French, Tony" <adfre...@regenstrief.org<redir.aspx?REF=Qj1yzHStiwpKhM0Nfa84xQflx-JkcYQMYMEy0hQd_6IETABEoKbTCAFtYWlsdG86YWRmcmVuY2hAcmVnZW5zdHJpZWYub3Jn>>, "GPC-DEV@LISTSERV.KUMC.EDU<redir.aspx?REF=pNh1vDjJti-nD9aNPMpgnVIvXOKsAs399Z_-3bk3iEoETABEoKbTCAFtYWlsdG86R1BDLURFVkBMSVNUU0VSVi5LVU1DLkVEVQ..>" <GPC-DEV@LISTSERV.KUMC.EDU<redir.aspx?REF=pNh1vDjJti-nD9aNPMpgnVIvXOKsAs399Z_-3bk3iEoETABEoKbTCAFtYWlsdG86R1BDLURFVkBMSVNUU0VSVi5LVU1DLkVEVQ..>> Subject: RE: DataBuilder installation instructions That's pretty much the main installation documentation, still. And that it is out of date is a known problem: * #335: problem: DataBuilder VM deployment outdated by migration of middle tier to jboss <redir.aspx?REF=l02ArUG3YbclGkb9YkfVT16GJ9tWpKyq6Cu_b5DnFNoETABEoKbTCAFodHRwczovL2luZm9ybWF0aWNzLmdwY25ldHdvcmsub3JnL3RyYWMvUHJvamVjdC90aWNrZXQvMzM1> I suggest you report details of the errors you're getting; perhaps there are easy fixes to the documentation that will get you going. Be sure to include the exact revision hash of the code you're trying to use; if you checked out the current code from the heron_extract<UrlBlockedError.aspx> repository, you might have better luck with an older version (such as rev 1b8a53f78be0 from Nov 2014, available in heron_extract.zip<redir.aspx?REF=MQLAqihRp1HMw4GwABGrrORljLijDE8LTVk97voAqBQETABEoKbTCAFodHRwczovL2luZm9ybWF0aWNzLmdwY25ldHdvcmsub3JnL3RyYWMvUHJvamVjdC9hdHRhY2htZW50L3dpa2kvQnVpbGRlclNhZ2EvaGVyb25fZXh0cmFjdC56aXA.>). -- Dan ________________________________ From: gpc-dev-boun...@listserv.kumc.edu<redir.aspx?REF=-TuGCYglDB3qOBv4gp8MAZB2QepWxTb78D9rgtdx2YEETABEoKbTCAFtYWlsdG86Z3BjLWRldi1ib3VuY2VzQGxpc3RzZXJ2Lmt1bWMuZWR1> [gpc-dev-boun...@listserv.kumc.edu<redir.aspx?REF=-TuGCYglDB3qOBv4gp8MAZB2QepWxTb78D9rgtdx2YEETABEoKbTCAFtYWlsdG86Z3BjLWRldi1ib3VuY2VzQGxpc3RzZXJ2Lmt1bWMuZWR1>] on behalf of French, Tony [adfre...@regenstrief.org<redir.aspx?REF=Qj1yzHStiwpKhM0Nfa84xQflx-JkcYQMYMEy0hQd_6IETABEoKbTCAFtYWlsdG86YWRmcmVuY2hAcmVnZW5zdHJpZWYub3Jn>] Sent: Thursday, July 07, 2016 10:56 AM To: GPC-DEV@LISTSERV.KUMC.EDU<redir.aspx?REF=pNh1vDjJti-nD9aNPMpgnVIvXOKsAs399Z_-3bk3iEoETABEoKbTCAFtYWlsdG86R1BDLURFVkBMSVNUU0VSVi5LVU1DLkVEVQ..> Subject: DataBuilder installation instructions We are working on getting DataBuilder installed in our environment. I found the BuilderSaga<UrlBlockedError.aspx> article for installing it into an i2b2 demo VM. Is that the best guide to reference for installing it into an actual working environment or are there step by step manual instructions available anywhere? I have tried following the screencast to install using the latest i2b2 demo VM but have already ran into several errors. Does anyone have a historical link to i2b2vmware-1703a.zip ? Thanks, Tony Tony French | Software Development Manager Tools and Shared Resources Center for Biomedical Informatics [cid:image001.png@01D1D904.F4DD3790] 1101 West Tenth Street Indianapolis, IN, 46202 Tel 317-274-9087 | Fax: 317-274-9305 Twitter: @Regenstrief | Facebook.com/regenstriefinstitute<UrlBlockedError.aspx> www.regenstrief.org<UrlBlockedError.aspx> Confidentiality Notice: The contents of this message and any files transmitted with it may contain confidential and/or privileged information and are intended solely for the use of the named addressee(s). Additionally, the information contained herein may have been disclosed to you from medical records with confidentiality protected by federal and state laws. Federal regulations and State laws prohibit you from making further disclosure of such information without the specific written consent of the person to whom the information pertains or as otherwise permitted by such regulations. A general authorization for the release of medical or other information is not sufficient for this purpose. If you have received this message in error, please notify the sender by return e-mail and delete the original message. Any retention, disclosure, copying, distribution or use of this information by anyone other than the intended recipient is strictly prohibited. ________________________________ UT Southwestern Medical Center The future of medicine, today.
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