#583: SNOW SCILHS Lab Metadata Expansion -----------------------------------------------+--------------------------- Reporter: campbell | Owner: campbell Type: enhancement | Status: assigned Priority: major | Milestone: snow- Component: data-stds | shrine-3 Keywords: LOINC Lab_PRO_CM SCILHS all-sites | Resolution: Blocking: 411 | Blocked By: -----------------------------------------------+---------------------------
Comment (by campbell): Yesh and I have checked the discrepancy and it arose from the frequent lab list originating with GPC sites not including some of the less common labs that Jeff Klann had included in his ARCH lab metadata. (SCILHS 3.1b was the origin of the 'LAB NAMES' scheme which we will eventually remove as ARCH accepts the larger SNOW SHRINE schema) Clearly we want these Hemoglobin A1Cs even if they are infrequent. I am checking the 211 lab test instances Phillip identified and we will be updating to include all clinically relevant tests from that list for October 1 release of SNOW SHRINE. Jim >>> 8/30/18 Phillip Reeder wrote: I’m taking a look at the lab terminology and had a question, is the lab_loinc part of the hierarchy supposed to be all inclusive? It seems to be missing a bunch of loinc codes, including loinc codes that are in the lab_name section of the hierarchy. For example, these 3 a1c codes are in the lab_name section, but not the lab_loinc section. LOINC:17855-8 Hemoglobin A1c in Blood by calculation LOINC:62388-4 Hemoglobin A1c in Blood by JDS/JSCC protocol LOINC:59261-8 Hemoglobin A1c in Blood by IFCC protocol You can run the following to get the list of the ones in the PCORI lab_name section, but not in the lab_loinc section. I show 211 terms. select distinct c_basecode from pcornet_labs where c_fullname like '\PCORI\LAB_RESULT_CM\LAB_NAME%' and c_basecode like 'LOINC:%' and c_basecode not in (select distinct c_basecode from pcornet_labs where c_basecode like 'LOINC:%' and c_fullname like '\PCORI\LAB_RESULT_CM\LAB_LOINC%') and c_basecode not like 'LOINC:LP%’; -- Ticket URL: <http://informatics.gpcnetwork.org/trac/Project/ticket/583#comment:15> gpc-informatics <http://informatics.gpcnetwork.org/> Greater Plains Network - Informatics _______________________________________________ Gpc-dev mailing list Gpc-dev@listserv.kumc.edu http://listserv.kumc.edu/mailman/listinfo/gpc-dev