How long are you simulating for? Have you looked at the rmsf? On 15 Dec 2013, at 18:42, xiao <helitr...@126.com> wrote:
> Dear all, > > I am doing a MD on a mutant protein which is unstable from exprient. However, > i found no difference between the wild type and the mutant protein from md, > the structure and the rmsd are very similar in the mutant and the wild type. > > Can anyone tell me how to tackle this problem? > > Best regards > > Fugui > -- > Gromacs Users mailing list > > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > * For (un)subscribe requests visit > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a > mail to gmx-users-requ...@gromacs.org. -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
