Messages by Date
-
2019/10/05
Re: [gmx-users] RMSD analysis of protein-ligand complex
Justin Lemkul
-
2019/10/05
Re: [gmx-users] RMSD analysis of protein-ligand complex
Quin K
-
2019/10/05
Re: [gmx-users] Gromacs2019 + Gaussian09 QMMM
nikolaev
-
2019/10/05
Re: [gmx-users] RMSD analysis of protein-ligand complex
Justin Lemkul
-
2019/10/05
Re: [gmx-users] RMSD analysis of protein-ligand complex
Quin K
-
2019/10/05
[gmx-users] Fwd: cut in gmx clustsize
Alex
-
2019/10/05
Re: [gmx-users] RMSD analysis of protein-ligand complex
Justin Lemkul
-
2019/10/05
Re: [gmx-users] RMSD analysis of protein-ligand complex
Quin K
-
2019/10/05
Re: [gmx-users] RMSD analysis of protein-ligand complex
Justin Lemkul
-
2019/10/05
Re: [gmx-users] RMSD analysis of protein-ligand complex
Quin K
-
2019/10/05
Re: [gmx-users] RMSD analysis of protein-ligand complex
Justin Lemkul
-
2019/10/05
Re: [gmx-users] RMSD analysis of protein-ligand complex
Quin K
-
2019/10/05
Re: [gmx-users] increase number of lipids in 128popc.pdb
Justin Lemkul
-
2019/10/05
Re: [gmx-users] RMSD analysis of protein-ligand complex
Justin Lemkul
-
2019/10/05
[gmx-users] RMSD analysis of protein-ligand complex
Quin K
-
2019/10/05
[gmx-users] increase number of lipids in 128popc.pdb
Yogesh Sharma
-
2019/10/04
Re: [gmx-users] how to calculate average structure
Subhomoi Borkotoky
-
2019/10/04
[gmx-users] how to calculate average structure
mmousivand93
-
2019/10/04
Re: [gmx-users] Hydrogen Bond analysis
Justin Lemkul
-
2019/10/04
[gmx-users] cut in gmx clustsize
Alex
-
2019/10/04
[gmx-users] Hydrogen Bond analysis
Pandya, Akash
-
2019/10/04
Re: [gmx-users] Reg: Your suggestions for Gromacs simulation using a cofactor and a Zn ion together
Justin Lemkul
-
2019/10/04
Re: [gmx-users] Simulation of membrane associated protein
Justin Lemkul
-
2019/10/04
Re: [gmx-users] GROMACS Energy groups
Justin Lemkul
-
2019/10/04
Re: [gmx-users] Adding a new residue and Duplicate atom index () in angles error
Justin Lemkul
-
2019/10/04
[gmx-users] Reg: Your suggestions for Gromacs simulation using a cofactor and a Zn ion together
Amit Jaiswal
-
2019/10/04
Re: [gmx-users] Simulation of membrane associated protein
Olga Press
-
2019/10/04
[gmx-users] GROMACS 2018.8 patch release available
Paul bauer
-
2019/10/04
Re: [gmx-users] Extracting trajectory
Jorden Cabal
-
2019/10/03
[gmx-users] GROMACS Energy groups
Adip Jhaveri
-
2019/10/03
Re: [gmx-users] Adding a new residue and Duplicate atom index () in angles error
Mijiddorj B
-
2019/10/03
Re: [gmx-users] Unable to run gmx_mpi genion non-interactively
Justin Lemkul
-
2019/10/03
Re: [gmx-users] Unable to run gmx_mpi genion non-interactively
Chenyu Liu
-
2019/10/03
[gmx-users] Unable to run gmx_mpi genion non-interactively
Sarah Lucas
-
2019/10/03
Re: [gmx-users] Adding a new residue and Duplicate atom index () in angles error
Justin Lemkul
-
2019/10/03
Re: [gmx-users] charmm36M generated topology conversion to GROMOS54A7 ff
Justin Lemkul
-
2019/10/03
Re: [gmx-users] Simulation of membrane associated protein
Justin Lemkul
-
2019/10/03
Re: [gmx-users] Protein ligand simulation
Justin Lemkul
-
2019/10/03
[gmx-users] Understanding the gmx dipoles and gmx dielectric GROMACS functionality
Patel, Lara Anne
-
2019/10/03
[gmx-users] Adding a new residue and Duplicate atom index () in angles error
Mijiddorj B
-
2019/10/02
[gmx-users] charmm36M generated topology conversion to GROMOS54A7 ff
Yogesh Sharma
-
2019/10/02
[gmx-users] Simulation of membrane associated protein
Olga Press
-
2019/10/02
[gmx-users] Extracting trajectory
anupama sharma
-
2019/10/02
[gmx-users] how to calculate average structure
mmousivand93
-
2019/10/02
[gmx-users] GROMACS 2019.4 patch release available
Paul bauer
-
2019/10/01
Re: [gmx-users] extracting trajectory using trjconv
Chenyu Liu
-
2019/10/01
Re: [gmx-users] extracting trajectory using trjconv
Hadi Rahmaninejad
-
2019/10/01
Re: [gmx-users] extracting trajectory using trjconv
Chenyu Liu
-
2019/10/01
Re: [gmx-users] extracting trajectory using trjconv
Chenyu Liu
-
2019/10/01
[gmx-users] extracting trajectory using trjconv
Hadi Rahmaninejad
-
2019/10/01
Re: [gmx-users] Protein ligand simulation
Najamuddin Memon
-
2019/10/01
[gmx-users] Protein ligand simulation
DEEPANSHU SINGLA
-
2019/09/30
[gmx-users] Parameter preparation of non-standard amino acid
Mijiddorj B
-
2019/09/30
Re: [gmx-users] How to handle calcium ions with charmm36 force field
sunyeping
-
2019/09/30
Re: [gmx-users] How to handle calcium ions with charmm36 force field
Justin Lemkul
-
2019/09/30
[gmx-users] How to handle calcium ions with charmm36 force field
sunyeping
-
2019/09/30
[gmx-users] gmx traj ekrot : too many iterations in routine JACOBI
Marlon Sidore
-
2019/09/30
Re: [gmx-users] (no subject)
Dallas Warren
-
2019/09/30
Re: [gmx-users] various issues when simulating cholesterol membrane
Justin Lemkul
-
2019/09/30
Re: [gmx-users] Position Restraints MD
Justin Lemkul
-
2019/09/30
Re: [gmx-users] Running iteration for lipid shrinking using InflateGRO methodology
Justin Lemkul
-
2019/09/30
[gmx-users] Pull Code
Johannes Hermann
-
2019/09/30
Re: [gmx-users] Umbrella sampling on lipid bilayer
John Whittaker
-
2019/09/30
Re: [gmx-users] Gromacs2019 + Gaussian09 QMMM
Groenhof, Gerrit
-
2019/09/29
[gmx-users] various issues when simulating cholesterol membrane
Ayesha Fatima
-
2019/09/29
Re: [gmx-users] Protein ligand simulation
Najamuddin Memon
-
2019/09/29
[gmx-users] Umbrella sampling on lipid bilayer
Mahsa Rezaei
-
2019/09/29
[gmx-users] (no subject)
Mahsa Rezaei
-
2019/09/28
[gmx-users] Gromacs2019 + Gaussian09 QMMM
nikolaev
-
2019/09/28
[gmx-users] Protein ligand simulation
DEEPANSHU SINGLA
-
2019/09/27
Re: [gmx-users] Position Restraints MD
ISHRAT JAHAN
-
2019/09/27
[gmx-users] Regarding RDF
Ashma Khan
-
2019/09/27
[gmx-users] Running iteration for lipid shrinking using InflateGRO methodology
Yogesh Sharma
-
2019/09/27
Re: [gmx-users] ion flux counter
Kutzner, Carsten
-
2019/09/26
Re: [gmx-users] ion flux counter
Harutyun Sahakyan
-
2019/09/26
Re: [gmx-users] Problem with adding New peptide Terminus
Justin Lemkul
-
2019/09/26
[gmx-users] Alchemical Transformation PosRes State B
Johannes Hermann
-
2019/09/26
Re: [gmx-users] ion flux counter
Kutzner, Carsten
-
2019/09/26
Re: [gmx-users] Problem with adding New peptide Terminus
Neena Susan Eappen
-
2019/09/26
[gmx-users] Fwd: ion flux counter
Harutyun Sahakyan
-
2019/09/26
[gmx-users] Recreating newer TPRs for old Gromacs (Jernej Zidar)
ABEL Stephane
-
2019/09/25
[gmx-users] Recreating newer TPRs for old Gromacs
Jernej Zidar
-
2019/09/25
[gmx-users] First beta release of GROMACS 2020
Paul bauer
-
2019/09/25
Re: [gmx-users] Ligand molecule occupancy
Justin Lemkul
-
2019/09/25
Re: [gmx-users] Umbrella sampling on lipid bilayer
Justin Lemkul
-
2019/09/25
Re: [gmx-users] Umbrella sampling on lipid bilayer
Mahsa Rezaei
-
2019/09/25
[gmx-users] Umbrella sampling on lipid bilayer
Mahsa Rezaei
-
2019/09/25
[gmx-users] Ligand molecule occupancy
Pandya, Akash
-
2019/09/25
Re: [gmx-users] issues running virus capsid simulation
David van der Spoel
-
2019/09/24
Re: [gmx-users] issues running virus capsid simulation
Justin Lemkul
-
2019/09/24
Re: [gmx-users] Getting non-bonded forces from GROMACS
Justin Lemkul
-
2019/09/24
Re: [gmx-users] Cannot Generate .gro and .cpt files after running nvt
Chenyu Liu
-
2019/09/24
Re: [gmx-users] Cannot Generate .gro and .cpt files after running nvt
Dallas Warren
-
2019/09/24
Re: [gmx-users] Umbrella sampling on lipid bilayer
Dallas Warren
-
2019/09/24
[gmx-users] issues running virus capsid simulation
Asis Jana
-
2019/09/24
Re: [gmx-users] Getting non-bonded forces from GROMACS
James
-
2019/09/24
Re: [gmx-users] Cannot Generate .gro and .cpt files after running nvt
Chenyu Liu
-
2019/09/24
Re: [gmx-users] Cannot Generate .gro and .cpt files after running nvt
Justin Lemkul
-
2019/09/24
Re: [gmx-users] Position Restraints MD
Justin Lemkul
-
2019/09/24
Re: [gmx-users] [gmx-user] CGenFF 4.0 vs 4.1, complex MD simulation.
Justin Lemkul
-
2019/09/24
Re: [gmx-users] Cannot Generate .gro and .cpt files after running nvt
Chenyu Liu
-
2019/09/24
Re: [gmx-users] Problem with adding New peptide Terminus
Justin Lemkul
-
2019/09/24
[gmx-users] Cannot Generate .gro and .cpt files after running nvt
Chenyu Liu
-
2019/09/24
Re: [gmx-users] Getting non-bonded forces from GROMACS
Mark Abraham
-
2019/09/24
[gmx-users] [gmx-user] CGenFF 4.0 vs 4.1, complex MD simulation.
Quin K
-
2019/09/24
Re: [gmx-users] index.ndx file of all cluster
Alex
-
2019/09/24
[gmx-users] Umbrella sampling on lipid bilayer
Mahsa Rezaei
-
2019/09/24
Re: [gmx-users] GROMACS Domain decomposition
John Whittaker
-
2019/09/24
[gmx-users] GROMACS Domain decomposition
NguyenDuyVy
-
2019/09/23
Re: [gmx-users] Position Restraints MD
ISHRAT JAHAN
-
2019/09/23
Re: [gmx-users] Position Restraints MD
ISHRAT JAHAN
-
2019/09/23
[gmx-users] Getting non-bonded forces from GROMACS
James
-
2019/09/23
[gmx-users] Problem with adding New peptide Terminus
Neena Susan Eappen
-
2019/09/23
[gmx-users] Neena Susan Eappen shared "C_Terminus" with you.
Neena Susan Eappen
-
2019/09/23
Re: [gmx-users] Atom type 'AS' not currently supported by GROMOS.
Justin Lemkul
-
2019/09/23
[gmx-users] potential
ÁLVARO RODRIGO RUIZ FERNÁNDEZ
-
2019/09/23
[gmx-users] Atom type 'AS' not currently supported by GROMOS.
Yogesh Sharma
-
2019/09/23
Re: [gmx-users] OPLS AA/M pdb2gmx error with inter
Justin Lemkul
-
2019/09/23
[gmx-users] OPLS AA/M pdb2gmx error with inter
Daniel Kozuch
-
2019/09/23
Re: [gmx-users] units
Justin Lemkul
-
2019/09/23
[gmx-users] units
antonia vyrkou
-
2019/09/23
Re: [gmx-users] Panelty score for CGenFF
Justin Lemkul
-
2019/09/23
Re: [gmx-users] gromos force field
Justin Lemkul
-
2019/09/23
Re: [gmx-users] Position Restraints MD
Justin Lemkul
-
2019/09/23
Re: [gmx-users] Slab shifts out of the simulation box
Justin Lemkul
-
2019/09/23
Re: [gmx-users] CHARMM GUI membrane builder's assembled output
Justin Lemkul
-
2019/09/23
Re: [gmx-users] Ionization: Your solvent group size (76663) is not a multiple of 3
Justin Lemkul
-
2019/09/23
[gmx-users] Panelty score for CGenFF
Quin K
-
2019/09/22
Re: [gmx-users] Fatal error in atom
Dallas Warren
-
2019/09/22
[gmx-users] index.ndx file of all cluster
Alex
-
2019/09/21
[gmx-users] ndx file
Omkar Singh
-
2019/09/21
[gmx-users] gromos force field
p buscemi
-
2019/09/21
[gmx-users] Fatal error in atom
Nandu TG
-
2019/09/20
Re: [gmx-users] question on system blow-up
Lei Qian
-
2019/09/20
Re: [gmx-users] RAM usage of gmx msd
Martin
-
2019/09/20
Re: [gmx-users] SIMD options - detection program issue
Szilárd Páll
-
2019/09/20
[gmx-users] Free webinar on accelerating sampling in GROMACS with the AWH method
Paul bauer
-
2019/09/20
Re: [gmx-users] question on system blow-up
John Whittaker
-
2019/09/20
Re: [gmx-users] Tesla GPUs: P40 or P100?
Matteo Tiberti
-
2019/09/19
[gmx-users] Position Restraints MD
ISHRAT JAHAN
-
2019/09/19
[gmx-users] question on system blow-up
Lei Qian
-
2019/09/19
Re: [gmx-users] simulation continuation without -t option
Prabir Khatua
-
2019/09/19
Re: [gmx-users] simulation continuation without -t option
Mark Abraham
-
2019/09/19
[gmx-users] Functional dynamics in gromacs
Gustavo Olivos
-
2019/09/19
Re: [gmx-users] simulation continuation without -t option
Prabir Khatua
-
2019/09/19
[gmx-users] Simulated Annealing Procedure
Neena Susan Eappen
-
2019/09/19
Re: [gmx-users] Tesla GPUs: P40 or P100?
Szilárd Páll
-
2019/09/19
[gmx-users] CHARMM GUI membrane builder's assembled output
Yogesh Sharma
-
2019/09/19
Re: [gmx-users] simulation continuation without -t option
Mark Abraham
-
2019/09/19
[gmx-users] simulation continuation without -t option
Prabir Khatua
-
2019/09/19
Re: [gmx-users] Amber 14SB force-field problem with residue HID
Man Hoang Viet
-
2019/09/19
Re: [gmx-users] -t option?
Hadi Rahmaninejad
-
2019/09/19
Re: [gmx-users] -t option?
Peter Kroon
-
2019/09/19
[gmx-users] Center of mass of ligand
Naveen BK
-
2019/09/19
[gmx-users] Energy minimization problem for POPE/POPG soluted bilayer taken from M. Karttunen website
daniel depope
-
2019/09/19
[gmx-users] Tesla GPUs: P40 or P100?
Matteo Tiberti
-
2019/09/18
Re: [gmx-users] -t option?
Hadi Rahmaninejad
-
2019/09/18
Re: [gmx-users] Tetrahedral Order Parameter
Dallas Warren
-
2019/09/18
[gmx-users] Tetrahedral Order Parameter
m g
-
2019/09/18
Re: [gmx-users] -t option?
Mahdi Bagherpoor
-
2019/09/18
[gmx-users] -t option?
Hadi Rahmaninejad
-
2019/09/18
Re: [gmx-users] Amber 14SB force-field problem with residue HID
Kevin
-
2019/09/18
[gmx-users] gmx trjorder help
Pandya, Akash
-
2019/09/18
Re: [gmx-users] RAM usage of gmx msd
Mark Abraham
-
2019/09/18
[gmx-users] SIMD options - detection program issue
Stefano Guglielmo
-
2019/09/17
Re: [gmx-users] Equilibration Problem.
Dallas Warren
-
2019/09/17
Re: [gmx-users] Slab shifts out of the simulation box
Mohammed Hamza
-
2019/09/17
Re: [gmx-users] Slab shifts out of the simulation box
Sohaib. Mohammed
-
2019/09/17
[gmx-users] Slab shifts out of the simulation box
Mohammed Hamza
-
2019/09/17
Re: [gmx-users] RAM usage of gmx msd
Martin Kern
-
2019/09/17
[gmx-users] Small ligand activators molecule
Shivangi Agarwal
-
2019/09/17
[gmx-users] Direction-periodic confusion
John Whittaker
-
2019/09/17
[gmx-users] Subject: RAM usage of gmx msd5
ABEL Stephane
-
2019/09/17
Re: [gmx-users] gromacs.org_gmx-users Digest, Vol 185, Issue 55
ABEL Stephane
-
2019/09/17
Re: [gmx-users] RAM usage of gmx msd
John Whittaker
-
2019/09/17
[gmx-users] Equilibration Problem.
Navneet Kumar Singh
-
2019/09/16
[gmx-users] RAM usage of gmx msd
Martin Kern
-
2019/09/16
[gmx-users] Ionization: Your solvent group size (76663) is not a multiple of 3
Mohammed I Sorour
-
2019/09/16
Re: [gmx-users] Issues with energy minimization of a membrane protein
Peter Kroon
-
2019/09/16
[gmx-users] Issues with energy minimization of a membrane protein
Prasanth G, Research Scholar
-
2019/09/15
Re: [gmx-users] What is the equivalent command for insert-molecules in Gromacs 3.3.1?
Dallas Warren
-
2019/09/15
Re: [gmx-users] What is the equivalent command for insert-molecules in Gromacs 3.3.1?
Mark Abraham
-
2019/09/15
Re: [gmx-users] RMSD analysis and stability
Justin Lemkul
-
2019/09/15
Re: [gmx-users] Batch mode error in GROMACS version 2019.2
Rajib Biswas
-
2019/09/15
Re: [gmx-users] RMSD analysis and stability
Bratin Kumar Das
-
2019/09/15
Re: [gmx-users] Batch mode error in GROMACS version 2019.2
Mark Abraham
-
2019/09/15
Re: [gmx-users] RMSD analysis and stability
Quin K
-
2019/09/15
Re: [gmx-users] Amber 14SB force-field problem with residue HID
Justin Lemkul
-
2019/09/15
Re: [gmx-users] What is the equivalent command for insert-molecules in Gromacs 3.3.1?
Justin Lemkul
-
2019/09/15
Re: [gmx-users] RMSD analysis and stability
Justin Lemkul
-
2019/09/15
Re: [gmx-users] Regarding obtaining potential energy using, energy groups
Justin Lemkul
-
2019/09/15
Re: [gmx-users] gromacs.org_gmx-users Digest, Vol 185, Issue 50
Nirali Desai
-
2019/09/15
[gmx-users] RMSD analysis and stability
Quin K
-
2019/09/14
Re: [gmx-users] Regarding obtaining potential energy using energy groups
David van der Spoel
-
2019/09/14
Re: [gmx-users] Regarding obtaining potential energy using energy groups
Najamuddin Memon
-
2019/09/14
[gmx-users] What is the equivalent command for insert-molecules in Gromacs 3.3.1?
ZHANG Cheng
-
2019/09/14
Re: [gmx-users] Regarding obtaining potential energy using energy groups
Nashit Jalal 17250017
-
2019/09/14
Re: [gmx-users] Regarding obtaining potential energy using energy groups
Najamuddin Memon
-
2019/09/14
Re: [gmx-users] Batch mode error in GROMACS version 2019.2
Rajib Biswas
-
2019/09/14
Re: [gmx-users] Batch mode error in GROMACS version 2019.2
David van der Spoel