How do you fix the matrix size? Should I do it while generation of .xpm file or while converting it to .eps and using which option?
Regards Nidhi On Fri, Dec 20, 2013 at 3:35 PM, Carsten Kutzner <ckut...@gwdg.de> wrote: > On 12/20/2013 10:09 AM, bipin singh wrote: > >> Not sure, might be something going wrong due to large dimension of your >> matrix. Which Gromacs version you are using. Others may provide some >> clues. >> > I just tried with a 483 x 486 matrix which went smoothly. > You could try to narrow down the problem. > See whether it works with other input data for example. > Check whether it works on another machine. > > Carsten > > >> >> On Fri, Dec 20, 2013 at 10:04 AM, Nidhi Jatana <nidhijat...@bic-svc.ac.in >> >wrote: >> >> Dear Sir/Madam >>> Please find attached the file containing the error. >>> >>> Thanking you >>> >>> Regards >>> -- >>> Nidhi Jatana >>> Senior Research Fellow >>> Bioinformatics Center >>> Sri Venkateswara College >>> (University of Delhi) >>> Dhaula Kuan >>> New Delhi-110021. >>> >>> >>> >>> On Thu, Dec 19, 2013 at 7:44 PM, Carsten Kutzner <ckut...@gwdg.de> >>> wrote: >>> >>> On 12/19/2013 12:53 PM, Nidhi Jatana wrote: >>>> >>>> Dear Sir/Madam >>>>> I generated the atomic density plot using g_densmap by giving the >>>>> following >>>>> command: >>>>> g_densmap -f *.xtc -s *.pdb -n *.ndx -o *.xpm >>>>> >>>>> The calculation completed successfully but when I am trying to convert >>>>> .xpm >>>>> file to .eps file using xpm2ps command, its giving error and aborts. >>>>> >>>>> What is the error message? >>>> >>>> If I use your set of commands with Gromacs 4.6.4, I can successfully >>>> >>> create >>> >>>> an EPS file. >>>> >>>> Carsten >>>> >>>> >>>> xpm2ps -f *.xpm -o *.eps -rainbow red -xpm *.xpm >>>>> >>>>> I have tried many options with setting -bx and -by but of no help. I >>>>> >>>> also >>> >>>> tried taking the .m2p file but the problem persist. Please find attached >>>>> the .m2p file for reference. Please help me with this. >>>>> >>>>> Thanking you >>>>> >>>>> Regards >>>>> -- >>>>> Nidhi Jatana >>>>> Senior Research Fellow >>>>> Bioinformatics Center >>>>> Sri Venkateswara College >>>>> (University of Delhi) >>>>> Dhaula Kuan >>>>> New Delhi-110021. >>>>> >>>>> >>>>> >>>>> -- >>>> Gromacs Users mailing list >>>> >>>> * Please search the archive at http://www.gromacs.org/ >>>> Support/Mailing_Lists/GMX-Users_List before posting! >>>> >>>> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >>>> >>>> * For (un)subscribe requests visit >>>> https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or >>>> send a mail to gmx-users-requ...@gromacs.org. >>>> >>>> -- >>> Gromacs Users mailing list >>> >>> * Please search the archive at >>> http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before >>> posting! >>> >>> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >>> >>> * For (un)subscribe requests visit >>> https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or >>> send a mail to gmx-users-requ...@gromacs.org. >>> >>> >>> >> > -- > Gromacs Users mailing list > > * Please search the archive at http://www.gromacs.org/ > Support/Mailing_Lists/GMX-Users_List before posting! > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > * For (un)subscribe requests visit > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > send a mail to gmx-users-requ...@gromacs.org. > -- Nidhi Jatana Senior Research Fellow Bioinformatics Center Sri Venkateswara College (University of Delhi) Dhaula Kuan New Delhi-110021. -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.