- "does it work? Does it give an error?" It's not. The error is:
CMake Error at fftwBuild-stamp/extract-fftwBuild.cmake:11 (message): error: file to extract does not exist: - The output of cat /proc/cpuinfo: ooker@ooker-Aspire-4741:~$ cat /proc/cpuinfo processor : 0 vendor_id : GenuineIntel cpu family : 6 model : 37 model name : Intel(R) Pentium(R) CPU P6200 @ 2.13GHz stepping : 5 microcode : 0xd1070214 cpu MHz : 933.000 cache size : 3072 KB physical id : 0 siblings : 2 core id : 0 cpu cores : 2 apicid : 0 initial apicid : 0 fdiv_bug : no f00f_bug : no coma_bug : no fpu : yes fpu_exception : yes cpuid level : 11 wp : yes flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe nx rdtscp lm constant_tsc arch_perfmon pebs bts xtopology nonstop_tsc aperfmperf pni dtes64 monitor ds_cpl est tm2 ssse3 cx16 xtpr pdcm pcid popcnt lahf_lm arat dtherm bogomips : 4255.92 clflush size : 64 cache_alignment : 64 address sizes : 36 bits physical, 48 bits virtual power management: processor : 1 vendor_id : GenuineIntel cpu family : 6 model : 37 model name : Intel(R) Pentium(R) CPU P6200 @ 2.13GHz stepping : 5 microcode : 0xd1070214 cpu MHz : 1199.000 cache size : 3072 KB physical id : 0 siblings : 2 core id : 2 cpu cores : 2 apicid : 4 initial apicid : 4 fdiv_bug : no f00f_bug : no coma_bug : no fpu : yes fpu_exception : yes cpuid level : 11 wp : yes flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe nx rdtscp lm constant_tsc arch_perfmon pebs bts xtopology nonstop_tsc aperfmperf pni dtes64 monitor ds_cpl est tm2 ssse3 cx16 xtpr pdcm pcid popcnt lahf_lm arat dtherm bogomips : 4255.92 clflush size : 64 cache_alignment : 64 address sizes : 36 bits physical, 48 bits virtual power management: - Using dpkg --list | grep compiler give me the list of installed compilers and version: ii g++ 4:4.8.1-2ubuntu3 i386 GNU C++ compiler ii g++-4.8 4.8.1-10ubuntu9 i386 GNU C++ compiler ii gcc 4:4.8.1-2ubuntu3 i386 GNU C compiler ii gcc-4.8 4.8.1-10ubuntu9 i386 GNU C compiler ii hardening-includes 2.3ubuntu1 all Makefile for enabling compiler flags for security hardening ii libxkbcommon0:i386 0.3.1-1 i386 library interface to the XKB compiler - shared library On Mon, Mar 24, 2014 at 6:04 PM, Mark Abraham <mark.j.abra...@gmail.com>wrote: > I can't delete a post. This is a mailing list, not a forum (even if you are > reading on some half-broken nabble setup, or something). > > A plain > > cmake .. > > from an empty build tree is designed to just work if you then run mdrun on > the same machine. If it doesn't, that's an error we want to fix, but as > Justin says we'll need a lot more information about your compiler and > hardware. > > Mark > > > > On Mon, Mar 24, 2014 at 10:32 AM, ooker <ganuongp...@gmail.com> wrote: > > > @Mark Abraham: I have received your email but because I don't see it on > the > > thread so I think you deleted your answer. Sorry about that. I'm still > new > > with the mail list. Anyway, I have already deleted the build folder and > > make a fresh install but it doesn't solve. > > > > @Justin Lemkul: my machine is Intel Pentium P6200 (2.13 GHz, 3 MB L3 > > cache). Any cmake command leads to the same error. So if you want a > > specific command, let's use the simplist one:* cmake ..* > > > > I know that I optimized it wrong, but how can I fix that? > > > > > > On Mon, Mar 24, 2014 at 6:11 AM, Justin Lemkul [via GROMACS] < > > ml-node+s5086n5015337...@n6.nabble.com> wrote: > > > > > > > > > > > On 3/23/14, 11:57 AM, ooker wrote: > > > > sorry for spamming, but I need to up this thread. I'll delete this > > after > > > > someone answer. Sorry. > > > > > > > > > > You'll need to provide exact details of your hardware and your exact > > cmake > > > command, otherwise there's nothing productive to suggest. The build > > > machinery > > > is good at picking the correct optimization type, so the only real > issue > > > is if > > > you're selecting an optimization that is not supported. > > > > > > -Justin > > > > > > -- > > > ================================================== > > > > > > Justin A. Lemkul, Ph.D. > > > Ruth L. Kirschstein NRSA Postdoctoral Fellow > > > > > > Department of Pharmaceutical Sciences > > > School of Pharmacy > > > Health Sciences Facility II, Room 601 > > > University of Maryland, Baltimore > > > 20 Penn St. > > > Baltimore, MD 21201 > > > > > > [hidden email] <http://user/SendEmail.jtp?type=node&node=5015337&i=0> > | > > > (410) 706-7441 > > > http://mackerell.umaryland.edu/~jalemkul > > > > > > ================================================== > > > -- > > > Gromacs Users mailing list > > > > > > * Please search the archive at > > > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > > > posting! > > > > > > * Can't post? 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