Dear all, I am studying a membrane protein of length 288 residues. I want to simulate in a DPPC bilayer. I have downloaded dppc equilibrated bilayer from Peter Tieleman's website as directed by Justin in his membrane-protein tutorial. But I found 128 lipid membrane is not enough for my protein. From the literature, I found I need 81 lipids in each leaflet. How can I construct a 162 lipid equilibrated bilayer? I tried CHARMM-GUI to build it. But the equilibration is giving RATTLE error. Please help me in this regard.
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