On 6/9/14, 9:08 AM, Venkat Reddy wrote:
Dear Justin, I have tried the command genbox -cp protein.gro -cs membrane.gro -o protein_in_membrane.gro but it got hanged. Is there something wrong with the command?
I wouldn't expect a hang as long as the box is set to appropriate dimensions. The new box for the protein shouldn't be substantially larger than the membrane itself.
-Justin -- ================================================== Justin A. Lemkul, Ph.D. Ruth L. Kirschstein NRSA Postdoctoral Fellow Department of Pharmaceutical Sciences School of Pharmacy Health Sciences Facility II, Room 601 University of Maryland, Baltimore 20 Penn St. Baltimore, MD 21201 jalem...@outerbanks.umaryland.edu | (410) 706-7441 http://mackerell.umaryland.edu/~jalemkul ================================================== -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
