Hi all, I have created hydrogen bond existence map. In the index file generated using hbn option I can see following lines at the end: 1 2 1598 1 2 1851 1 2 1852 1 2 1862 10 11 1643 10 11 1651 10 11 1658 10 11 1664 10 11 1682 10 11 1748 10 11 1754 10 11 1761 10 11 1762 10 11 1772 10 11 1830 10 11 1831 10 11 1838 10 11 1851 10 11 1862
There are 19 lines in total and also in the existence map created using hbm option, I could see 19 lines. But when I generate index file with a2 and calculate hydrogen bond with my ligand moleules, I can see zero bonds. Am I doing something wrong? Thanks Nidhi -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.