Hi, That one's our fault, sorry :-( It'll be fixed in 5.1.1 out shortly, but you can work around it by adding
-DSPHINX_EXECUTABLE=no to your cmake call (which, by the way, still has a lot of stuff in it that I've said you don't want to have) Mark On Sat, Oct 24, 2015 at 6:14 PM Ana Marija <sokovic.anamar...@gmail.com> wrote: > HI, > > I tried to configure gromacs 5.1 via: > > ams@login1:/lustre/beagle2/ams/new/gromacs/gromacs-5.1/build> cmake .. > -DFFTWF_INCLUDE_DIR=/opt/fftw/3.3.4.0/abudhabi/include > -DFFTWF_LIBRARY=/opt/fftw/3.3.4.0/abudhabi/lib/libfftw3f.a > > -DMPI_LIBRARY="/opt/cray/mpt/7.0.5/gni/mpich2-gnu/49/lib/libmpich.a;/opt/cray/mpt/7.0.5/gni/mpich2-gnu/49/lib/libfmpich_gnu_49.a;/opt/cray/mpt/7.0.5/gni/mpich2-gnu/49/lib/libmpl.a;/opt/cray/pmi/default/lib64/libpmi.a;/opt/cray/rca/default/lib64/librca.a;/opt/gcc/4.9.2/snos/lib64/libgfortran.a;/opt/gcc/4.9.2/snos/lib64/libstdc++.a;/opt/cray/alps/default/lib64/libalpslli.a;/opt/cray/alps/default/lib64/libalpsutil.a;/opt/gcc/4.9.2/snos/lib64/libgomp.a;/opt/gcc/4.9.2/snos/lib64/libquadmath.a;/opt/cray/ugni/default/lib64/libugni.a;/opt/cray/udreg/default/lib64/libudreg.a;/opt/cray/xpmem/default/lib64/libxpmem.a;/opt/cray/wlm_detect/default/lib64/libwlm_detect.a;/lib64/libdl.so.2" > -DMPI_INCLUDE_PATH="/opt/cray/mpt/7.0.5/gni/mpich2-gnu/49/include" > -DCMAKE_CXX_COMPILER=CC -DCMAKE_C_COMPILER=cc -DGMX_FORCE_CXX=ON > -DGMX_DOUBLE=OFF -DGMX_PREFER_STATIC_LIBS=ON -DGMX_GPU=OFF -DGMX_MPI=ON > -DCMAKE_INSTALL_PREFIX=/lustre/beagle2/ams/new/gromacs/ginstall > -DGMX_X11=OFF -DGMX_EXTERNAL_BLAS=OFF -DGMX_EXTERNAL_LAPACK=OFF > > > But I am getting this error: > -- Found PythonInterp: /usr/bin/python (found version "2.6.9") > CMake Error at cmake/FindSphinx.cmake:52 (string): > string sub-command REGEX, mode REPLACE needs at least 6 arguments total > to > command. > Call Stack (most recent call first): > docs/CMakeLists.txt:62 (find_package) > > line 62 in /lustre/beagle2/ams/new/gromacs/gromacs-5.1/docs/CMakeLists.txt > looks like this: > > find_package(Sphinx 1.2.3 QUIET COMPONENTS pygments) > > can you please advise me on what to do? > > Thanks > Ana > -- > Gromacs Users mailing list > > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > posting! > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > * For (un)subscribe requests visit > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > send a mail to gmx-users-requ...@gromacs.org. > -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.