Hi, Did you removed Water ? Check also there is no other protein in the same file.
FR. > Le 14 mai 2016 à 07:04:15, Upasana Ray <upasanaray...@gmail.com> a écrit : > > Dear user, > > I have generated my final protein.pdb file by using trjconv command from > .xtc file. The size of my pdb file is 0.98 GB, so whenever I am opening it > for docking purpose my computer is freezing. Now how can I reduce my pdb > file size from GB to MB for using it properly. please help me to deal > with this problem. > -- > Gromacs Users mailing list > > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > * For (un)subscribe requests visit > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a > mail to gmx-users-requ...@gromacs.org. -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
