How many frames do u save using trjconv?. Can you please post your full trjconv command here. On 14 May 2016 18:21, "Chalaoux, Francois-Regis" < francois-regis.chala...@evotec.com> wrote:
> What is your protein, PDB Id ? > > FR. > > > Le 14 mai 2016 à 12:04:09, Upasana Ray <upasanaray...@gmail.com> a > écrit : > > > > yes I have removed water & the pdb file only contains protein > > > > On Sat, May 14, 2016 at 1:50 PM, Chalaoux, Francois-Regis < > > francois-regis.chala...@evotec.com> wrote: > > > >> Hi, > >> > >> Did you removed Water ? > >> Check also there is no other protein in the same file. > >> > >> FR. > >> > >>> Le 14 mai 2016 à 07:04:15, Upasana Ray <upasanaray...@gmail.com> a > >> écrit : > >>> > >>> Dear user, > >>> > >>> I have generated my final protein.pdb file by using trjconv command > from > >>> .xtc file. The size of my pdb file is 0.98 GB, so whenever I am opening > >> it > >>> for docking purpose my computer is freezing. Now how can I reduce my > pdb > >>> file size from GB to MB for using it properly. please help me to deal > >>> with this problem. > >>> -- > >>> Gromacs Users mailing list > >>> > >>> * Please search the archive at > >> http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > >> posting! > >>> > >>> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > >>> > >>> * For (un)subscribe requests visit > >>> https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > >> send a mail to gmx-users-requ...@gromacs.org. > >> > >> -- > >> Gromacs Users mailing list > >> > >> * Please search the archive at > >> http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > >> posting! > >> > >> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > >> > >> * For (un)subscribe requests visit > >> https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > >> send a mail to gmx-users-requ...@gromacs.org. > >> > > -- > > Gromacs Users mailing list > > > > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > posting! > > > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > > > * For (un)subscribe requests visit > > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > send a mail to gmx-users-requ...@gromacs.org. > > -- > Gromacs Users mailing list > > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > posting! > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > * For (un)subscribe requests visit > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > send a mail to gmx-users-requ...@gromacs.org. -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.