Hi, I have run a 100ns-REMD of protein, which has 20 replicas (i.e. remd1.xtc, remd2.xtc, ..., remd20.xtc). I want to analyze a trajectory at specific temperature such as a trajectory at experiment temperature 298K rather than analyzing the continuous trajectory. I have known GROMACS exchange coordinate when REMD running. Do I just analyze remd2.xtc of replica 2(T=298K) if I want to analyze a trajectory at 298K? Do I need to do something else on the trajectories to get a trajectory at specific temperature(i.e. 298K)?
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