Do you mean that the original trajectories REMD generated are belong to "one trajectory per temperature" (i.e. the md2.xtc is a trajectory at 298K)?
Ouyang At 2017-06-01 21:00:52, "Mark Abraham" <mark.j.abra...@gmail.com> wrote: >Hi, > >That's what you already have. See >http://www.gromacs.org/Documentation/How-tos/REMD#Post-Processing > >Mark > >On Thu, Jun 1, 2017 at 5:37 AM YanhuaOuyang <15901283...@163.com> wrote: > >> Hi, >> I have run a 100ns-REMD of protein, which has 20 replicas (i.e. >> remd1.xtc, remd2.xtc, ..., remd20.xtc). I want to analyze a trajectory at >> specific temperature such as a trajectory at experiment temperature 298K >> rather than analyzing the continuous trajectory. I have known GROMACS >> exchange coordinate when REMD running. Do I just analyze remd2.xtc of >> replica 2(T=298K) if I want to analyze a trajectory at 298K? Do I need to >> do something else on the trajectories to get a trajectory at specific >> temperature(i.e. 298K)? >> >> Best regards, >> Ouyang >> -- >> Gromacs Users mailing list >> >> * Please search the archive at >> http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before >> posting! >> >> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >> >> * For (un)subscribe requests visit >> https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or >> send a mail to gmx-users-requ...@gromacs.org. >> >-- >Gromacs Users mailing list > >* Please search the archive at >http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! > >* Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > >* For (un)subscribe requests visit >https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a >mail to gmx-users-requ...@gromacs.org. -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.