Dear Mark Thank you gmx rama -f traj.xtc -s topol.tpr -o ramachandran.xvg
This was my command.. I didn't choose any dihedral particularly On Wed, 7 Jun 2017 at 2:00 PM, Mark Abraham <mark.j.abra...@gmail.com> wrote: > Hi, > > Sounds like your choice of dihedrals doesn't match your system. How did you > select them? > > Mark > > On Wed, 7 Jun 2017 08:41 RAHUL SURESH <drrahulsur...@gmail.com> wrote: > > > Dear Users > > > > When I try to execute ramachandran plot analysis, I get the following > note > > like "Dihedral around 5809,5816 not found in topology. Using mult=3" > > (nearly 30-40 dihedrals). What is it about? > > > > Input is just protein structure extended upto 150ns. > > > > -- > > *Regards,* > > *Rahul Suresh* > > *Research Scholar* > > *Bharathiar University* > > *Coimbatore* > > -- > > Gromacs Users mailing list > > > > * Please search the archive at > > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > > posting! > > > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > > > * For (un)subscribe requests visit > > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > > send a mail to gmx-users-requ...@gromacs.org. > > > -- > Gromacs Users mailing list > > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > posting! > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > * For (un)subscribe requests visit > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > send a mail to gmx-users-requ...@gromacs.org. > -- *Regards,* *Rahul Suresh* *Research Scholar* *Bharathiar University* *Coimbatore* -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.