Does the minimization end normally or it crashes? On Thu, Oct 10, 2019 at 9:27 AM Suprim Tha <shrestha.suprim...@gmail.com> wrote:
> I was trying Gromacs based upon the tutorial on > http://www.mdtutorials.com/gmx/lysozyme/05_EM.html > However, when I run the command gmx mdrun -v -deffnm em, only em.log, > em.edr and em.tpr are formed but not em. trr and em.gro Without the energy > minimized .gro file, I cannot continue further. Please help me with this. I > have tried two different proteins and still I am stuck with the same step. > Thanks in advance. > -- > Gromacs Users mailing list > > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > posting! > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > * For (un)subscribe requests visit > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > send a mail to gmx-users-requ...@gromacs.org. > -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.