Thanks sir. The problem is resolved now. On Fri, 11 Oct 2019, 6:52 pm wangyue2...@lzu.edu.cn, <wangyue2...@lzu.edu.cn> wrote:
> Hi, I remember mdp file control this problem. > > > Yue > > Sent from my iPhone > > > On Oct 10, 2019, at 5:24 PM, antonia vyrkou <avyr...@gmail.com> wrote: > > > > Does the minimization end normally or it crashes? > > > > On Thu, Oct 10, 2019 at 9:27 AM Suprim Tha <shrestha.suprim...@gmail.com > > > > wrote: > > > >> I was trying Gromacs based upon the tutorial on > >> http://www.mdtutorials.com/gmx/lysozyme/05_EM.html > >> However, when I run the command gmx mdrun -v -deffnm em, only em.log, > >> em.edr and em.tpr are formed but not em. trr and em.gro Without the > energy > >> minimized .gro file, I cannot continue further. Please help me with > this. I > >> have tried two different proteins and still I am stuck with the same > step. > >> Thanks in advance. > >> -- > >> Gromacs Users mailing list > >> > >> * Please search the archive at > >> http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > >> posting! > >> > >> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > >> > >> * For (un)subscribe requests visit > >> https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > >> send a mail to gmx-users-requ...@gromacs.org. > >> > > -- > > Gromacs Users mailing list > > > > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > posting! > > > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > > > * For (un)subscribe requests visit > > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > send a mail to gmx-users-requ...@gromacs.org. > > -- > Gromacs Users mailing list > > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > posting! > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > * For (un)subscribe requests visit > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > send a mail to gmx-users-requ...@gromacs.org. > -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
