Den 2019-11-02 kl. 14:25, skrev Mahmood Naderan:
Hi,
Although I have specified a custom CC and CXX path, the cmake command fails
with an error.
$ cmake .. -DGMX_GPU=on -DCMAKE_INSTALL_PREFIX=../single61
-DGMX_BUILD_OWN_FFTW=ON -DGMX_CUDA_TARGET_SM=61
-DCMAKE_C_COMPILER=/home/mahmood/tools/gcc-6.1.0/bin/gcc
-DCMAKE_CXX_COMPILER=/home/mahmood/tools/gcc-6.1.0/bin/g++-- The C compiler
identification is unknown
-- The CXX compiler identification is unknown
-- Check for working C compiler: /home/mahmood/tools/gcc-6.1.0/bin/gcc-- Check
for working C compiler: /home/mahmood/tools/gcc-6.1.0/bin/gcc -- brokenCMake
Error at
/home/mahmood/tools/cmake-3.15.4/share/cmake-3.15/Modules/CMakeTestCCompiler.cmake:60
(message): The C compiler
"/home/mahmood/tools/gcc-6.1.0/bin/gcc"
is not able to compile a simple test program.
Have you verified that the compiler is installed correctly, e.g. by
compiling a small test program?
Is /home/mahmood/tools/gcc-6.1.0/bin/ in your PATH?
It fails with the following output:
Change Dir:
/home/mahmood/cactus/gromacs/gromacs-2019.4/build/CMakeFiles/CMakeTmp
Run Build Command(s):/usr/bin/gmake cmTC_68dcc/fast && /usr/bin/gmake -f
CMakeFiles/cmTC_68dcc.dir/build.make CMakeFiles/cmTC_68dcc.dir/build
gmake[1]: Entering directory
`/home/mahmood/cactus/gromacs/gromacs-2019.4/build/CMakeFiles/CMakeTmp'
Building C object CMakeFiles/cmTC_68dcc.dir/testCCompiler.c.o
/home/mahmood/tools/gcc-6.1.0/bin/gcc -o
CMakeFiles/cmTC_68dcc.dir/testCCompiler.c.o -c
/home/mahmood/cactus/gromacs/gromacs-2019.4/build/CMakeFiles/CMakeTmp/testCCompiler.c
/home/mahmood/tools/gcc-6.1.0/libexec/gcc/x86_64-pc-linux-gnu/6.1.0/cc1:
error while loading shared libraries: libmpc.so.3: cannot open shared object
file: No such file or directory gmake[1]: ***
[CMakeFiles/cmTC_68dcc.dir/testCCompiler.c.o] Error 1
gmake[1]: Leaving directory
`/home/mahmood/cactus/gromacs/gromacs-2019.4/build/CMakeFiles/CMakeTmp'
gmake: *** [cmTC_68dcc/fast] Error 2
CMake will not be able to correctly generate this project.
Call Stack (most recent call first):
CMakeLists.txt:41 (project)
-- Configuring incomplete, errors occurred!
See also
"/home/mahmood/cactus/gromacs/gromacs-2019.4/build/CMakeFiles/CMakeOutput.log".See also
"/home/mahmood/cactus/gromacs/gromacs-2019.4/build/CMakeFiles/CMakeError.log".
However, the path is correct
$ /home/mahmood/tools/gcc-6.1.0/bin/gcc -vUsing built-in specs.
COLLECT_GCC=/home/mahmood/tools/gcc-6.1.0/bin/gccCOLLECT_LTO_WRAPPER=/home/mahmood/tools/gcc-6.1.0/libexec/gcc/x86_64-pc-linux-gnu/6.1.0/lto-wrapperTarget:
x86_64-pc-linux-gnu
Configured with: ./configure --prefix=/home/mahmood/tools/gcc-6.1.0
--disable-multilib --enable-languages=c,c++Thread model: posix
gcc version 6.1.0 (GCC)
Any idea about that?
Regards,
Mahmood
--
David van der Spoel, Ph.D., Professor of Biology
Head of Department, Cell & Molecular Biology, Uppsala University.
Box 596, SE-75124 Uppsala, Sweden. Phone: +46184714205.
http://www.icm.uu.se
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