Yes. the compiler is correct.
However the system is centos 6.9 and it is pretty old and I am sure I will face
further problems.So, I have to change the system.Anyway, thanks.
Regards,
Mahmood
On Sunday, November 3, 2019, 10:43:44 AM GMT+3:30, David van der Spoel
<sp...@xray.bmc.uu.se> wrote:
Den 2019-11-02 kl. 14:25, skrev Mahmood Naderan:
> Hi,
> Although I have specified a custom CC and CXX path, the cmake command fails
> with an error.
>
> $ cmake .. -DGMX_GPU=on -DCMAKE_INSTALL_PREFIX=../single61
> -DGMX_BUILD_OWN_FFTW=ON -DGMX_CUDA_TARGET_SM=61
> -DCMAKE_C_COMPILER=/home/mahmood/tools/gcc-6.1.0/bin/gcc
> -DCMAKE_CXX_COMPILER=/home/mahmood/tools/gcc-6.1.0/bin/g++-- The C compiler
> identification is unknown
> -- The CXX compiler identification is unknown
> -- Check for working C compiler: /home/mahmood/tools/gcc-6.1.0/bin/gcc--
> Check for working C compiler: /home/mahmood/tools/gcc-6.1.0/bin/gcc --
> brokenCMake Error at
> /home/mahmood/tools/cmake-3.15.4/share/cmake-3.15/Modules/CMakeTestCCompiler.cmake:60
> (message): The C compiler
>
> "/home/mahmood/tools/gcc-6.1.0/bin/gcc"
> is not able to compile a simple test program.
Have you verified that the compiler is installed correctly, e.g. by
compiling a small test program?
Is /home/mahmood/tools/gcc-6.1.0/bin/ in your PATH?
>
> It fails with the following output:
>
> Change Dir:
>/home/mahmood/cactus/gromacs/gromacs-2019.4/build/CMakeFiles/CMakeTmp
> Run Build Command(s):/usr/bin/gmake cmTC_68dcc/fast && /usr/bin/gmake -f
>CMakeFiles/cmTC_68dcc.dir/build.make CMakeFiles/cmTC_68dcc.dir/build
> gmake[1]: Entering directory
>`/home/mahmood/cactus/gromacs/gromacs-2019.4/build/CMakeFiles/CMakeTmp'
>Building C object CMakeFiles/cmTC_68dcc.dir/testCCompiler.c.o
> /home/mahmood/tools/gcc-6.1.0/bin/gcc -o
>CMakeFiles/cmTC_68dcc.dir/testCCompiler.c.o -c
>/home/mahmood/cactus/gromacs/gromacs-2019.4/build/CMakeFiles/CMakeTmp/testCCompiler.c
> /home/mahmood/tools/gcc-6.1.0/libexec/gcc/x86_64-pc-linux-gnu/6.1.0/cc1:
>error while loading shared libraries: libmpc.so.3: cannot open shared object
>file: No such file or directory gmake[1]: ***
>[CMakeFiles/cmTC_68dcc.dir/testCCompiler.c.o] Error 1
> gmake[1]: Leaving directory
>`/home/mahmood/cactus/gromacs/gromacs-2019.4/build/CMakeFiles/CMakeTmp'
>gmake: *** [cmTC_68dcc/fast] Error 2
>
>
>
> CMake will not be able to correctly generate this project.
> Call Stack (most recent call first):
> CMakeLists.txt:41 (project)
>
>
> -- Configuring incomplete, errors occurred!
> See also
> "/home/mahmood/cactus/gromacs/gromacs-2019.4/build/CMakeFiles/CMakeOutput.log".See
> also
> "/home/mahmood/cactus/gromacs/gromacs-2019.4/build/CMakeFiles/CMakeError.log".
> However, the path is correct
>
>
> $ /home/mahmood/tools/gcc-6.1.0/bin/gcc -vUsing built-in specs.
> COLLECT_GCC=/home/mahmood/tools/gcc-6.1.0/bin/gccCOLLECT_LTO_WRAPPER=/home/mahmood/tools/gcc-6.1.0/libexec/gcc/x86_64-pc-linux-gnu/6.1.0/lto-wrapperTarget:
> x86_64-pc-linux-gnu
> Configured with: ./configure --prefix=/home/mahmood/tools/gcc-6.1.0
> --disable-multilib --enable-languages=c,c++Thread model: posix
> gcc version 6.1.0 (GCC)
>
>
>
> Any idea about that?
>
> Regards,
> Mahmood
>
--
David van der Spoel, Ph.D., Professor of Biology
Head of Department, Cell & Molecular Biology, Uppsala University.
Box 596, SE-75124 Uppsala, Sweden. Phone: +46184714205.
http://www.icm.uu.se
--
Gromacs Users mailing list
* Please search the archive at
http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting!
* Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
* For (un)subscribe requests visit
https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a
mail to gmx-users-requ...@gromacs.org.
--
Gromacs Users mailing list
* Please search the archive at
http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting!
* Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
* For (un)subscribe requests visit
https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a
mail to gmx-users-requ...@gromacs.org.
