rekado pushed a commit to branch master
in repository guix.
commit ab4a91b25280f4e57f007e5b3cea72a30091f647
Author: Ricardo Wurmus <[email protected]>
AuthorDate: Sat Jun 5 01:47:39 2021 +0200
gnu: Add r-treeio.
* gnu/packages/bioconductor.scm (r-treeio): New variable.
---
gnu/packages/bioconductor.scm | 32 ++++++++++++++++++++++++++++++++
1 file changed, 32 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 0302c74..10463b2 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -5675,6 +5675,38 @@ This permits greater efficiency in common operations,
most notably matrix
multiplication.")
(license license:gpl3)))
+(define-public r-treeio
+ (package
+ (name "r-treeio")
+ (version "1.16.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "treeio" version))
+ (sha256
+ (base32
+ "0ypl4h80m08sf7r4zfvqgvpsz46x15wvcl1idq5pd813bp1w2sws"))))
+ (properties `((upstream-name . "treeio")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-ape" ,r-ape)
+ ("r-dplyr" ,r-dplyr)
+ ("r-jsonlite" ,r-jsonlite)
+ ("r-magrittr" ,r-magrittr)
+ ("r-rlang" ,r-rlang)
+ ("r-tibble" ,r-tibble)
+ ("r-tidytree" ,r-tidytree)))
+ (native-inputs `(("r-knitr" ,r-knitr)))
+ (home-page "https://github.com/YuLab-SMU/treeio";)
+ (synopsis "Base classes and functions for Phylogenetic tree input and
output")
+ (description
+ "This is an R package to make it easier to import and store phylogenetic
+trees with associated data; and to link external data from different sources
+to phylogeny. It also supports exporting phylogenetic trees with
+heterogeneous associated data to a single tree file and can be served as a
+platform for merging tree with associated data and converting file formats.")
+ (license license:artistic2.0)))
+
(define-public r-biocsingular
(package
(name "r-biocsingular")
