rekado pushed a commit to branch master
in repository guix.
commit efefb2be3a3992dacbe8a1c9ed210fb4a80331ab
Author: Ricardo Wurmus <[email protected]>
AuthorDate: Sat Jun 5 01:47:08 2021 +0200
gnu: Add r-trajectoryutils.
* gnu/packages/bioconductor.scm (r-trajectoryutils): New variable.
---
gnu/packages/bioconductor.scm | 30 ++++++++++++++++++++++++++++++
1 file changed, 30 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 56906bd..dab37d5 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -4157,6 +4157,36 @@ purposes. The package also contains legacy support for
early single-end,
ungapped alignment formats.")
(license license:artistic2.0)))
+(define-public r-trajectoryutils
+ (package
+ (name "r-trajectoryutils")
+ (version "1.0.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "TrajectoryUtils" version))
+ (sha256
+ (base32
+ "1b7mg3ypp1ay98cav47h9vn692lx0n9b5b0hpansgnkr5prb823b"))))
+ (properties
+ `((upstream-name . "TrajectoryUtils")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-igraph" ,r-igraph)
+ ("r-matrix" ,r-matrix)
+ ("r-s4vectors" ,r-s4vectors)
+ ("r-singlecellexperiment" ,r-singlecellexperiment)
+ ("r-summarizedexperiment" ,r-summarizedexperiment)))
+ (native-inputs `(("r-knitr" ,r-knitr)))
+ (home-page "https://bioconductor.org/packages/TrajectoryUtils";)
+ (synopsis "Single-cell trajectory analysis utilities")
+ (description
+ "This package implements low-level utilities for single-cell trajectory
+analysis, primarily intended for re-use inside higher-level packages. It
+includes a function to create a cluster-level minimum spanning tree and data
+structures to hold pseudotime inference results.")
+ (license license:gpl3)))
+
(define-public r-slingshot
(package
(name "r-slingshot")
