sharlatan pushed a commit to branch master
in repository guix.
commit 201d30fb4fc6af098b26e6711eed9945a6aaa421
Author: Sharlatan Hellseher <[email protected]>
AuthorDate: Thu Apr 24 12:36:32 2025 +0100
gnu: python-pandera: Fix tests.
* gnu/packages/python-science.scm (python-pandera) [source] <snippet>:
Remove tests deletion and ignore them with pytest options which are
working now.
[arguments] <test-flags> Skip some more tests; run tests in parallel up
to 8 thread, supported upstream.
[propagated-inputs]: Remove python-hypothesis; add
python-hypothesis-next and python-modin.
[native-inputs]: Add python-pytest-xdist.
Change-Id: I45482203519ceb2208a330d91c07d12b65e6ee53
---
gnu/packages/python-science.scm | 54 +++++++++++++++++++++++++----------------
1 file changed, 33 insertions(+), 21 deletions(-)
diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm
index e4d7806255..f51de6a21a 100644
--- a/gnu/packages/python-science.scm
+++ b/gnu/packages/python-science.scm
@@ -1995,6 +1995,8 @@ idea of the remaining amount of computation to be done.")
(define-public python-pandera
(package
(name "python-pandera")
+ ;; FIXME: The latest version requires hypothesis >= 6.92.7, which can't be
+ ;; picked from python-hypothesis-next for some reason.
(version "0.18.0")
(source
(origin
@@ -2005,34 +2007,43 @@ idea of the remaining amount of computation to be
done.")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
- (base32 "14b5aij5zjkwvsimg0v00qvp59mhhq7ljim4qghcn432vkg9gh47"))
- (modules '((guix build utils)))
- ;; These tests require PySpark and Modin. We need to remove the entire
- ;; directory, since the conftest.py in these directories contain
- ;; imports. (See: https://github.com/pytest-dev/pytest/issues/7452)
- (snippet '(begin
- (delete-file-recursively "tests/pyspark")
- (delete-file-recursively "tests/modin")))))
+ (base32 "14b5aij5zjkwvsimg0v00qvp59mhhq7ljim4qghcn432vkg9gh47"))))
(build-system pyproject-build-system)
(arguments
(list
- #:test-flags '(list "-k"
- (string-append
- ;; Mypy functionality is experimental and relying
- ;; on pandas-stubs can lead to false
- ;; positives. These tests currently fail.
- "not test_python_std_list_dict_generics"
- " and not test_python_std_list_dict_empty_and_none"
- " and not test_pandas_modules_importable"
- " and not test_check_groups"
- ;; This is a test failure due to unexpected error
- ;; message format. It is harmless.
- " and not test_pandas_stubs_false_positives"))))
+ #:test-flags
+ #~(list "--numprocesses" (number->string (min 8 (parallel-job-count)))
+ "--ignore=tests/pyspark"
+ "-k" (string-join
+ ;; Failed: DID NOT RAISE <class
'pandera.errors.SchemaError'>
+ (list "not test_from_records_validates_the_schema"
+ "test_init_pandas_dataframe_errors"
+ "test_schema_dtype_crs_without_coerce"
+ "test_schema_from_dataframe"
+ "test_schema_model"
+ "test_validate_coerce_on_init"
+ ;; multimethod.DispatchError: ('str_length: 0
+ ;; methods found', (<class
+ ;; 'pandas.core.series.Series'>, <class 'NoneType'>,
+ ;; <class 'int'>), [])
+ "test_succeeding"
+ "test_failing"
+ "test_failing_with_none"
+ ;; pandera.errors.SchemaError: Error while executing
+ ;; check function: KeyError("foo")
+ "test_check_groups"
+ ;;
[pandas_series.py-plugin_mypy.ini-expected_errors13]
+ ;; - assert 1 == 2
+ "test_pandas_stubs_false_positives"
+ ;; TypeError: type 'Series' is not subscriptable
+ "test_pandas_modules_importable")
+ " and not "))))
;; Pandera comes with a lot of extras. We test as many as possible, but do
;; not include all of them in the propagated-inputs. Currently, we have to
;; skip the pyspark and io tests due to missing packages python-pyspark
;; and python-frictionless.
- (propagated-inputs (list python-hypothesis ;strategies extra
+ (propagated-inputs (list python-hypothesis-next ;strategies extra
+ python-modin
python-multimethod
python-numpy
python-packaging
@@ -2049,6 +2060,7 @@ idea of the remaining amount of computation to be done.")
python-pyarrow ;needed to run fastapi tests
python-pytest
python-pytest-asyncio
+ python-pytest-xdist
python-setuptools
python-sphinx
python-uvicorn ;needed to run fastapi tests
