guix_mirror_bot pushed a commit to branch master
in repository guix.
commit 50591e81be4d4f7ab3ca82fa38af61076243afaa
Author: Andreas Enge <[email protected]>
AuthorDate: Thu Oct 23 21:20:13 2025 +0200
gnu: Remove htslib-1.19.
* gnu/packages/bioinformatics.scm (htslib-1.19): Delete variable.
Change-Id: I7804d3ae403dbdf149e3012922f7ac9a382288d7
---
gnu/packages/bioinformatics.scm | 42 -----------------------------------------
1 file changed, 42 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index a1c29347ea..d42686deac 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -9599,48 +9599,6 @@ data. It also provides the @command{bgzip},
@command{htsfile}, and
;; the rest is released under the Expat license
(license (list license:expat license:bsd-3))))
-(define-public htslib-1.19
- (package
- (inherit htslib)
- (version "1.19")
- (source (origin
- (method url-fetch)
- (uri (string-append
- "https://github.com/samtools/htslib/releases/download/";
- version "/htslib-" version ".tar.bz2"))
- (sha256
- (base32
- "0dh79lwpspwwfbkmllrrhbk8nkvlfc5b5ib4d0xg5ld79w6c8lc7"))
- (snippet
- #~(begin
- (use-modules (guix build utils))
- (delete-file-recursively "htscodecs")))))
- (build-system gnu-build-system)
- ;; Let htslib translate "gs://" and "s3://" to regular https links with
- ;; "--enable-gcs" and "--enable-s3". For these options to work, we also
- ;; need to set "--enable-libcurl".
- (arguments
- `(#:configure-flags '("--enable-gcs"
- "--enable-libcurl"
- "--enable-s3"
- "--with-external-htscodecs")))
- (inputs
- (list bzip2 curl openssl xz))
- ;; This is referred to in the pkg-config file as a required library.
- (propagated-inputs
- (list htscodecs zlib))
- (native-inputs
- (list perl))
- (home-page "https://www.htslib.org";)
- (synopsis "C library for reading/writing high-throughput sequencing data")
- (description
- "HTSlib is a C library for reading/writing high-throughput sequencing
-data. It also provides the @command{bgzip}, @command{htsfile}, and
-@command{tabix} utilities.")
- ;; Files under cram/ are released under the modified BSD license;
- ;; the rest is released under the Expat license
- (license (list license:expat license:bsd-3))))
-
(define-public htslib-1.14
(package/inherit htslib
(version "1.14")
