guix_mirror_bot pushed a commit to branch master
in repository guix.
commit 87b90f04891c88cf871bd02d76088f0b3bb2df1e
Author: Andreas Enge <[email protected]>
AuthorDate: Thu Oct 23 21:10:19 2025 +0200
gnu: Remove htslib-for-samtools-1.2.
* gnu/packages/bioinformatics.scm (htslib-for-samtools-1.2):
Delete variable.
Change-Id: I62c8525d27321acd7fea32e25623e5cbd7e74c33
---
gnu/packages/bioinformatics.scm | 23 -----------------------
1 file changed, 23 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index fe1bf8807a..0b835980e5 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -9750,29 +9750,6 @@ data. It also provides the @command{bgzip},
@command{htsfile}, and
(base32
"1rja282fwdc25ql6izkhdyh8ppw8x2fs0w0js78zgkmqjlikmma9"))))))
-(define htslib-for-samtools-1.2
- (package/inherit htslib
- (version "1.2.1")
- (source (origin
- (method url-fetch)
- (uri (string-append
- "https://github.com/samtools/htslib/releases/download/"
- version "/htslib-" version ".tar.bz2"))
- (sha256
- (base32
- "1c32ssscbnjwfw3dra140fq7riarp2x990qxybh34nr1p5r17nxx"))))
- (arguments
- `(#:phases
- (modify-phases %standard-phases
- (add-after 'unpack 'patch-tests
- (lambda _
- (substitute* "test/test.pl"
- (("/bin/bash") (which "bash"))))))))
- (inputs
- `(("zlib" ,zlib)))
- (native-inputs
- `(("perl" ,perl)))))
-
(define htslib-for-stringtie
(package
(inherit htslib-1.12)